Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   IL983_RS19795 Genome accession   NZ_CP063047
Coordinates   4304202..4304759 (+) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain KC-Tt-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4299202..4309759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL983_RS19775 (IL983_19775) pilR 4300478..4301815 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  IL983_RS19780 (IL983_19780) thiO 4301861..4302955 (-) 1095 WP_009316267.1 glycine oxidase ThiO -
  IL983_RS19785 (IL983_19785) - 4303090..4303599 (+) 510 WP_015503652.1 GspH/FimT family pseudopilin -
  IL983_RS19790 (IL983_19790) - 4303705..4304211 (+) 507 WP_003094696.1 GspH/FimT family pseudopilin -
  IL983_RS19795 (IL983_19795) pilV 4304202..4304759 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  IL983_RS19800 (IL983_19800) pilW 4304756..4305580 (+) 825 WP_003094698.1 type 4a pilus minor pilin PilW -
  IL983_RS19805 (IL983_19805) pilX 4305577..4306164 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  IL983_RS19810 (IL983_19810) pilY1 4306176..4309667 (+) 3492 WP_015503654.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=492530 IL983_RS19795 WP_003094697.1 4304202..4304759(+) (pilV) [Pseudomonas aeruginosa strain KC-Tt-1]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=492530 IL983_RS19795 WP_003094697.1 4304202..4304759(+) (pilV) [Pseudomonas aeruginosa strain KC-Tt-1]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCAGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978