Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   M062_RS08195 Genome accession   NC_021577
Coordinates   1731510..1732106 (+) Length   198 a.a.
NCBI ID   WP_003087237.1    Uniprot ID   Q9I3H9
Organism   Pseudomonas aeruginosa RP73     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1726510..1737106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M062_RS08175 (M062_08175) - 1727410..1727787 (+) 378 WP_003083354.1 hypothetical protein -
  M062_RS08180 (M062_08180) - 1728041..1728908 (-) 868 Protein_1631 substrate-binding periplasmic protein -
  M062_RS08185 (M062_08185) dnaX 1728945..1731059 (+) 2115 WP_041025788.1 DNA polymerase III subunit gamma/tau -
  M062_RS08190 (M062_08190) - 1731105..1731431 (+) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  M062_RS08195 (M062_08195) recR 1731510..1732106 (+) 597 WP_003087237.1 recombination mediator RecR Machinery gene
  M062_RS08200 (M062_08200) - 1732229..1733377 (+) 1149 WP_016561737.1 acyl-CoA dehydrogenase family protein -
  M062_RS08205 (M062_08205) - 1733390..1733929 (-) 540 WP_016561738.1 CbrC family protein -
  M062_RS08210 (M062_08210) - 1734003..1734890 (-) 888 WP_016561739.1 SDR family NAD(P)-dependent oxidoreductase -
  M062_RS08215 (M062_08215) - 1734887..1736470 (-) 1584 WP_079276727.1 flavin-containing monooxygenase -
  M062_RS30790 - 1736593..1736760 (+) 168 Protein_1639 TetR family transcriptional regulator -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21173.42 Da        Isoelectric Point: 6.0063

>NTDB_id=49247 M062_RS08195 WP_003087237.1 1731510..1732106(+) (recR) [Pseudomonas aeruginosa RP73]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=49247 M062_RS08195 WP_003087237.1 1731510..1732106(+) (recR) [Pseudomonas aeruginosa RP73]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGCTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTGGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGTGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5Z2V

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48

Multiple sequence alignment