Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KIM44_RS09820 Genome accession   NZ_CP074769
Coordinates   2010708..2011337 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 99_0288     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2005708..2016337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM44_RS09800 (KIM44_09670) ycbZ 2006110..2007870 (-) 1761 WP_032344991.1 AAA family ATPase -
  KIM44_RS09805 (KIM44_09675) matP 2008056..2008508 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KIM44_RS09810 (KIM44_09680) ompA 2008583..2009623 (-) 1041 WP_000750416.1 porin OmpA -
  KIM44_RS09815 (KIM44_09685) sulA 2009980..2010489 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KIM44_RS09820 (KIM44_09690) sxy/tfoX 2010708..2011337 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KIM44_RS09825 (KIM44_09695) yccS 2011300..2013462 (-) 2163 WP_000875023.1 YccS family putative transporter -
  KIM44_RS09830 (KIM44_09700) yccF 2013472..2013918 (-) 447 WP_001261235.1 YccF domain-containing protein -
  KIM44_RS09835 (KIM44_09705) helD 2014041..2016095 (+) 2055 WP_001297106.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=492326 KIM44_RS09820 WP_000839153.1 2010708..2011337(+) (sxy/tfoX) [Escherichia coli strain 99_0288]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=492326 KIM44_RS09820 WP_000839153.1 2010708..2011337(+) (sxy/tfoX) [Escherichia coli strain 99_0288]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1