Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   IL989_RS19070 Genome accession   NZ_CP062984
Coordinates   338995..339159 (+) Length   54 a.a.
NCBI ID   WP_269387144.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context

Location: 333995..344159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS19065 srfAB 335886..338978 (+) 3093 Protein_307 surfactin non-ribosomal peptide synthetase SrfAB -
  IL989_RS19070 comS 338995..339159 (+) 165 WP_269387144.1 competence protein ComS Regulator

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6236.25 Da        Isoelectric Point: 12.3302

>NTDB_id=492289 IL989_RS19070 WP_269387144.1 338995..339159(+) (comS) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MRARRSSSLNRSDKRLIRSIILFPQHNAGCISSISLGRPARATTSLLYFCWRDR

Nucleotide


Download         Length: 165 bp        

>NTDB_id=492289 IL989_RS19070 WP_269387144.1 338995..339159(+) (comS) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
ATGAGAGCGAGGAGGAGCAGCAGTTTGAACCGATCCGACAAGCGCCTTATCAGAAGCATTATCCTGTTTCCTCAGCACAA
CGCAGGATGTATATCCTCAATCAGCTTGGGCAGGCCAGCACGAGCTACAACGTCCCTGCTGTACTTTTGCTGGAGGGATC
GGTAG

Domains

Predicted by InterproScan.

Bacillus competence protein S (ComS)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

60.87

85.185

0.519