Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   IL989_RS12650 Genome accession   NZ_CP062984
Coordinates   2579237..2579989 (-) Length   250 a.a.
NCBI ID   WP_013353066.1    Uniprot ID   A0A9P1JIQ0
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2574237..2584989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS12625 (IL989_12625) mreC 2574672..2575535 (-) 864 WP_013353061.1 rod shape-determining protein MreC -
  IL989_RS12630 (IL989_12630) mreB 2575566..2576579 (-) 1014 WP_013353062.1 cell shape-determining protein MreB -
  IL989_RS12635 (IL989_12635) radC 2576671..2577366 (-) 696 WP_013353063.1 DNA repair protein RadC -
  IL989_RS12640 (IL989_12640) - 2577398..2577967 (-) 570 WP_013353064.1 nucleoside triphosphate pyrophosphatase -
  IL989_RS12645 (IL989_12645) - 2578109..2579110 (-) 1002 WP_193350501.1 SPOR domain-containing protein -
  IL989_RS12650 (IL989_12650) comC 2579237..2579989 (-) 753 WP_013353066.1 A24 family peptidase Machinery gene
  IL989_RS12655 (IL989_12655) - 2580128..2581420 (-) 1293 WP_193350502.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  IL989_RS12660 (IL989_12660) - 2581479..2584121 (-) 2643 WP_013353068.1 valine--tRNA ligase -
  IL989_RS12665 (IL989_12665) - 2584572..2584763 (+) 192 WP_013353069.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 26869.51 Da        Isoelectric Point: 9.0703

>NTDB_id=492267 IL989_RS12650 WP_013353066.1 2579237..2579989(-) (comC) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MLLILFLLGLIFGSFFYTAACRIPLRISVISPRSSCSFCGLPLSWGELVPVVSYVLQKGRCRNCRGKLSIMYPAAECWTA
CLFTAAGIHFGFSRELLVALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLLIVGRIFSPLDSWYAGFAGAVCGFFLLIFI
MFVSKGGIGAGDVKLFGVIGLALGVKLVLIAFFLSVIIGAVYGMCAAAGGRLGKKQPFPFAPAIAAGSAVSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=492267 IL989_RS12650 WP_013353066.1 2579237..2579989(-) (comC) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
GTGCTTTTGATTCTGTTTTTGCTCGGTTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGGAT
CTCGGTTATTTCGCCGCGCTCATCCTGTTCCTTTTGCGGCTTGCCGCTCTCCTGGGGTGAGCTGGTGCCCGTCGTTTCTT
ATGTCCTGCAAAAAGGAAGATGCAGAAACTGCCGCGGGAAGCTGTCGATTATGTATCCGGCGGCGGAATGCTGGACGGCA
TGTTTATTTACGGCTGCCGGTATTCATTTCGGTTTCTCAAGAGAACTGTTAGTCGCTCTGTTATTTCTGTCTCTATTAAT
GATTGTTACCGTGACAGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTGCCGCTTCTCATCGTCG
GCCGTATTTTTTCTCCGCTAGATTCATGGTATGCAGGGTTTGCGGGAGCCGTTTGCGGATTTTTTCTGCTTATTTTTATT
ATGTTTGTCAGTAAAGGAGGCATCGGTGCGGGTGATGTGAAACTGTTTGGGGTGATCGGTCTTGCACTAGGCGTGAAGCT
CGTACTCATTGCATTCTTTCTTTCCGTTATAATCGGAGCCGTATACGGGATGTGCGCCGCAGCGGGCGGCAGGCTTGGTA
AAAAGCAGCCTTTCCCGTTTGCGCCGGCCATCGCGGCCGGGAGCGCTGTGAGTTATTTATACGGTGAAGAACTGTTTTCG
TTTTACATCAAACTCGCTTCCGGAGGAGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

59.677

99.2

0.592