Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   IL989_RS10365 Genome accession   NZ_CP062984
Coordinates   2166993..2167601 (+) Length   202 a.a.
NCBI ID   WP_014470057.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2161993..2172601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS10325 (IL989_10325) - 2163057..2163563 (-) 507 WP_193350325.1 PTS glucose transporter subunit IIA -
  IL989_RS10330 (IL989_10330) - 2163700..2164113 (+) 414 WP_193350327.1 Hsp20/alpha crystallin family protein -
  IL989_RS10335 (IL989_10335) - 2164143..2164568 (-) 426 WP_227014198.1 YppG family protein -
  IL989_RS10340 (IL989_10340) - 2164757..2164939 (+) 183 WP_003153532.1 YppF family protein -
  IL989_RS10345 (IL989_10345) - 2164978..2165346 (-) 369 WP_013352641.1 YppE family protein -
  IL989_RS10350 (IL989_10350) - 2165392..2165637 (-) 246 WP_071348116.1 DUF5446 family protein -
  IL989_RS10355 (IL989_10355) sspM 2165842..2165946 (+) 105 WP_013352643.1 acid-soluble spore protein SspM -
  IL989_RS10360 (IL989_10360) - 2165989..2166951 (-) 963 WP_193350329.1 DUF2515 domain-containing protein -
  IL989_RS10365 (IL989_10365) recU 2166993..2167601 (+) 609 WP_014470057.1 Holliday junction resolvase RecU Machinery gene
  IL989_RS10370 (IL989_10370) - 2167640..2170420 (+) 2781 WP_193350331.1 PBP1A family penicillin-binding protein -
  IL989_RS10375 (IL989_10375) - 2170499..2170990 (-) 492 WP_193350333.1 YpoC family protein -
  IL989_RS10380 (IL989_10380) nth 2170987..2171646 (-) 660 WP_016939068.1 endonuclease III -
  IL989_RS10385 (IL989_10385) dnaD 2171665..2172363 (-) 699 WP_013352649.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23738.77 Da        Isoelectric Point: 9.2648

>NTDB_id=492249 IL989_RS10365 WP_014470057.1 2166993..2167601(+) (recU) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNQYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFEKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=492249 IL989_RS10365 WP_014470057.1 2166993..2167601(+) (recU) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
GTGATTCGGTATCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATCAATATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCATTATCCGAAAAGAAGCGCCGCAGTTATTAAGGAAGCTTAT
TTTAAGCAGTCTTCGACAACCGATTACAACGGAATTTATAAAGGGCGTTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTAGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGAAAAGGTTTATTTCCTCGAAGCTGACAAGCTGTTTGTCTTTTGGGAAAGAAAGGAG
AACAACGGCAGAAAGTCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

89.95

98.515

0.886