Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   IL989_RS08420 Genome accession   NZ_CP062984
Coordinates   1758595..1758966 (+) Length   123 a.a.
NCBI ID   WP_227014237.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1753595..1763966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS08415 (IL989_08415) - 1757031..1758242 (-) 1212 WP_193351809.1 cytochrome P450 -
  IL989_RS08420 (IL989_08420) nucA/comI 1758595..1758966 (+) 372 WP_227014237.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  IL989_RS08425 (IL989_08425) - 1759041..1759772 (+) 732 WP_013352342.1 YoaK family protein -
  IL989_RS08430 (IL989_08430) - 1759808..1760170 (-) 363 WP_125122635.1 hypothetical protein -
  IL989_RS08435 (IL989_08435) - 1760364..1761692 (-) 1329 WP_193351811.1 S8 family peptidase -
  IL989_RS08440 (IL989_08440) - 1761876..1762109 (+) 234 WP_193351812.1 hypothetical protein -
  IL989_RS08445 (IL989_08445) - 1762364..1763071 (+) 708 WP_045506034.1 poly-gamma-glutamate hydrolase family protein -
  IL989_RS08450 (IL989_08450) - 1763131..1763583 (+) 453 WP_193351813.1 OsmC family protein -
  IL989_RS08455 (IL989_08455) - 1763597..1763950 (-) 354 WP_014470379.1 multidrug efflux SMR transporter -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13293.73 Da        Isoelectric Point: 5.1599

>NTDB_id=492248 IL989_RS08420 WP_227014237.1 1758595..1758966(+) (nucA/comI) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MGAGIHSENTAEAASRYDQVLYFPLLKYPETGNHIKDAISAGHSDICTIDRGGAEERRKESLKGIPTKPGFDRDEWPMAV
CTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 372 bp        

>NTDB_id=492248 IL989_RS08420 WP_227014237.1 1758595..1758966(+) (nucA/comI) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
ATGGGCGCCGGCATCCATTCGGAAAATACTGCGGAAGCTGCATCCCGATATGATCAGGTGCTGTATTTCCCGCTGTTGAA
ATATCCAGAGACGGGAAATCATATAAAAGACGCCATTTCGGCAGGGCATTCTGACATTTGTACAATTGATCGCGGCGGAG
CTGAGGAAAGAAGGAAAGAATCATTGAAAGGCATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCGATGGCAGTC
TGTACAGAAGGCGGGGCAGGGGCTGACATCAGATATGTAACCCCTTCGGATAATCGCGGAGCCGGTTCGTGGGTTGGAAA
TCAAATGAGCGGATATTCCGACGGCACGAGAGTATTATTTATCGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.557

99.187

0.561