Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IL989_RS07870 Genome accession   NZ_CP062984
Coordinates   1584440..1585339 (+) Length   299 a.a.
NCBI ID   WP_193351783.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1579440..1590339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS07850 (IL989_07850) - 1580129..1581832 (+) 1704 WP_193351782.1 glycosyl transferase -
  IL989_RS07855 (IL989_07855) - 1581829..1582110 (+) 282 WP_045506187.1 FlhB-like flagellar biosynthesis protein -
  IL989_RS07860 (IL989_07860) sucC 1582285..1583442 (+) 1158 WP_013352244.1 ADP-forming succinate--CoA ligase subunit beta -
  IL989_RS07865 (IL989_07865) sucD 1583471..1584373 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  IL989_RS07870 (IL989_07870) dprA 1584440..1585339 (+) 900 WP_193351783.1 DNA-processing protein DprA Machinery gene
  IL989_RS07875 (IL989_07875) topA 1585521..1587596 (+) 2076 WP_193351784.1 type I DNA topoisomerase -
  IL989_RS07880 (IL989_07880) trmFO 1587661..1588968 (+) 1308 WP_013352248.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  IL989_RS07885 (IL989_07885) xerC 1589038..1589955 (+) 918 WP_013352249.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32919.14 Da        Isoelectric Point: 9.4258

>NTDB_id=492244 IL989_RS07870 WP_193351783.1 1584440..1585339(+) (dprA) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLREPHPLTVLSEGKTAPKAIFREIERKEAELDKVLSDYRREGITVI
PISSSRYPSWLKTIYDPPAVLFAKGHTSLLEKGRKIGIVGTRKPTEDGIKAVGHLTTELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARGVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=492244 IL989_RS07870 WP_193351783.1 1584440..1585339(+) (dprA) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
TTGGATCAAGCGTCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACGAGAGCCGCATCCATTAACCGTTTTGTCAGAAGGGAAAACAGCTCCGAAAGCAA
TTTTTCGAGAAATAGAGCGCAAGGAAGCGGAACTTGATAAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATC
CCGATTTCATCAAGCCGCTATCCTTCATGGCTTAAAACAATTTATGATCCGCCGGCTGTCTTGTTTGCAAAAGGGCACAC
GTCACTTCTTGAAAAAGGAAGAAAAATAGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTACCACTGAACTCTCAAAAAAAGGCTGGGTCATAGTAAGCGGGCTGGCATCCGGCATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTAATAGCCGGCGGATTCCATCATATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATATATGGCTGAACATCACCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAGTGGCATTTTC
CGATGAGAAACCGCATAATCAGCGGATTAAGTGAAGGAATTGTAGTTGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACGGCTTATCAAGCCCTTGATCAAGGGAGAGAGGTATTTGCCGTTCCCGGTTCCATTTTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCGGTATTATGTGCAGAGGATATTGACGGAGAGCTGACCGCCCGAGGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

71.237

100

0.712
  dprA Lactococcus lactis subsp. cremoris KW2

41.935

93.311

0.391