Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IL989_RS07015 Genome accession   NZ_CP062984
Coordinates   1367508..1367792 (+) Length   94 a.a.
NCBI ID   WP_013352109.1    Uniprot ID   A0AAP7NBF5
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1362508..1372792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS06995 (IL989_06995) - 1363754..1364662 (+) 909 WP_193351717.1 ketopantoate reductase family protein -
  IL989_RS07000 (IL989_07000) - 1364694..1365926 (-) 1233 WP_193351718.1 aminopeptidase -
  IL989_RS07005 (IL989_07005) - 1366027..1366161 (-) 135 WP_013352107.1 protein YkpC -
  IL989_RS07010 (IL989_07010) mreBH 1366232..1367239 (-) 1008 WP_193351719.1 cell shape-determining protein MreBH -
  IL989_RS07015 (IL989_07015) abrB 1367508..1367792 (+) 285 WP_013352109.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  IL989_RS07020 (IL989_07020) - 1367965..1369269 (+) 1305 WP_045506393.1 ATP-binding protein -
  IL989_RS07025 (IL989_07025) - 1369271..1370098 (+) 828 WP_088612744.1 gamma-glutamylcyclotransferase -
  IL989_RS07030 (IL989_07030) ktrC 1370139..1370804 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  IL989_RS07035 (IL989_07035) ade 1370954..1372687 (+) 1734 WP_193351720.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10542.41 Da        Isoelectric Point: 5.2168

>NTDB_id=492243 IL989_RS07015 WP_013352109.1 1367508..1367792(+) (abrB) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPDNQEYGNGKIILSPEGAK
MLLEEIEEALKDKS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=492243 IL989_RS07015 WP_013352109.1 1367508..1367792(+) (abrB) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAACTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGAGAAATTACCCCTGATAATCAGGAGTACGGCAACGGTAAAATCATCTTAAGCCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCATTAAAAGATAAATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.522

97.872

0.553