Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   IL989_RS06905 Genome accession   NZ_CP062984
Coordinates   1346987..1347583 (+) Length   198 a.a.
NCBI ID   WP_013352088.1    Uniprot ID   A0A9P1JH25
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1341987..1352583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS06870 (IL989_06870) - 1342026..1342481 (+) 456 WP_193351703.1 flavodoxin -
  IL989_RS06875 (IL989_06875) dapD 1342563..1343273 (+) 711 WP_013352082.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  IL989_RS06880 (IL989_06880) - 1343344..1344468 (+) 1125 WP_193351704.1 N-acetyldiaminopimelate deacetylase -
  IL989_RS06885 (IL989_06885) - 1344529..1344774 (+) 246 WP_013352084.1 YkuS family protein -
  IL989_RS06890 (IL989_06890) - 1344808..1345614 (-) 807 WP_193351705.1 mechanosensitive ion channel family protein -
  IL989_RS06895 (IL989_06895) - 1345848..1346042 (+) 195 Protein_1313 peroxiredoxin -
  IL989_RS06900 (IL989_06900) - 1346064..1346522 (+) 459 WP_193351706.1 redoxin domain-containing protein -
  IL989_RS06905 (IL989_06905) rok 1346987..1347583 (+) 597 WP_013352088.1 transcriptional regulator Rok Regulator
  IL989_RS06910 (IL989_06910) - 1347604..1348596 (-) 993 WP_071346898.1 sporulation protein -
  IL989_RS06915 (IL989_06915) - 1348743..1349345 (+) 603 WP_193351707.1 molybdenum cofactor guanylyltransferase -
  IL989_RS06920 (IL989_06920) - 1349398..1350417 (+) 1020 WP_193351708.1 molybdopterin-synthase adenylyltransferase MoeB -
  IL989_RS06925 (IL989_06925) glp 1350435..1351727 (+) 1293 WP_193351709.1 gephyrin-like molybdotransferase Glp -
  IL989_RS06930 (IL989_06930) mobB 1351688..1352209 (+) 522 WP_193351710.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22539.60 Da        Isoelectric Point: 9.6909

>NTDB_id=492242 IL989_RS06905 WP_013352088.1 1346987..1347583(+) (rok) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSTQPQMQSITTLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETGNDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=492242 IL989_RS06905 WP_013352088.1 1346987..1347583(+) (rok) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCAGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTACCAAAAGCCGCAG
ACACAGCCTCAATCCACCCAGCCGCAAATGCAGTCTATTACGACTCTTCCAGCCGGCATTCCAGACGGTTCTACTAGAAG
AAGAAGAGGGACCGCAAGACCGGGTTCAAAGGCGGCAAAACTGCGCGAAGCAGCCATTAAAACATTGAAACGCCACAATG
CAGCAATCAAAAGTTCAGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACCTTTATG
CAAAGCTTAATTAAAATGTATCCTGAAGTAAAAAAACCATATCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACAGGAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

85.052

97.98

0.833