Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   IL989_RS05605 Genome accession   NZ_CP062984
Coordinates   1109960..1111789 (+) Length   609 a.a.
NCBI ID   WP_193351577.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1104960..1116789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS05575 (IL989_05575) - 1105622..1106200 (+) 579 WP_013351830.1 GNAT family N-acetyltransferase -
  IL989_RS05580 (IL989_05580) spx 1106378..1106773 (+) 396 WP_003327578.1 transcriptional regulator Spx -
  IL989_RS05585 (IL989_05585) - 1106832..1107488 (-) 657 WP_065521689.1 TerC family protein -
  IL989_RS05595 (IL989_05595) mecA 1107764..1108420 (+) 657 WP_014470612.1 adaptor protein MecA Regulator
  IL989_RS05600 (IL989_05600) - 1108571..1109731 (+) 1161 WP_193351576.1 competence protein CoiA family protein -
  IL989_RS05605 (IL989_05605) pepF 1109960..1111789 (+) 1830 WP_193351577.1 oligoendopeptidase F Regulator
  IL989_RS05610 (IL989_05610) - 1111825..1111992 (-) 168 WP_016938224.1 hypothetical protein -
  IL989_RS05615 (IL989_05615) spxH 1112277..1113179 (-) 903 WP_013351835.1 protease adaptor protein SpxH -
  IL989_RS05620 (IL989_05620) - 1113176..1113574 (-) 399 WP_013351836.1 thiol management oxidoreductase -
  IL989_RS05625 (IL989_05625) - 1113799..1114485 (-) 687 WP_013351837.1 lytic transglycosylase domain-containing protein -
  IL989_RS05630 (IL989_05630) - 1114490..1115065 (-) 576 WP_193351578.1 CYTH domain-containing protein -
  IL989_RS05635 (IL989_05635) - 1115190..1115555 (+) 366 WP_013351839.1 hypothetical protein -
  IL989_RS05640 (IL989_05640) yjbM 1115583..1116218 (+) 636 WP_013351840.1 GTP diphosphokinase -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 69788.45 Da        Isoelectric Point: 5.4370

>NTDB_id=492238 IL989_RS05605 WP_193351577.1 1109960..1111789(+) (pepF) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MTEENKAAQLPDRSEVKAEHTWRLEDIFPSDEAWNKEFQAVKELIPNLSSFKGTLAHSADNLYTALTAQDEVTSRLGKLY
AYAHMRSDQDTGNSFYQGLNDKAASLYSQAASATAYIEPEILAIQEDKLHQFILEKEELKVYSHAIEEITKQRPHVLSEK
EEALLAEASEALSSPSNTFSILNNADITFPSIKDENGKETQITHGNFINFLESSDREVRKNAFKAVYKTYGQYKNTMATT
LSGTVKKDNFYARVKKYKSAREAALSNNNIPEEVYDNLIKTINKHLPLLHRYIDLRKKVLGLDEVHNYDLYTPLVKDSGM
KVTYEEAKDYMLKGLAPLGDEYASILKEGLENRWVDVYENKGKRSGAYSSGTYGTNPYILMNWHDTVNNLFTLVHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTTNEALLGEYMLNSLKDEKQRLYLLNHMLEGFRGTVFRQTMFAEFEHLIHTKAQ
EGEPLTPELLNKLYYDLNKKYFGDNMVIDEEISLEWSRIPHFYYNYYVYQYATGYSAAQALSSQILKEGKPAVERYTNFL
KAGSSEYPIDILKKAGVDMTSPEPIEAACKMFEEKLNEMEELLSKVNPS

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=492238 IL989_RS05605 WP_193351577.1 1109960..1111789(+) (pepF) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
ATGACTGAGGAAAATAAAGCAGCACAGCTGCCTGACAGAAGTGAAGTAAAGGCAGAGCATACATGGAGACTAGAGGATAT
TTTTCCTAGTGATGAGGCCTGGAATAAAGAATTTCAAGCAGTTAAAGAATTAATTCCGAATTTATCTTCCTTTAAAGGCA
CGCTTGCTCATTCAGCCGATAATTTATATACGGCGCTTACCGCACAGGATGAAGTGACGAGCCGTCTGGGAAAACTTTAC
GCATACGCGCATATGCGCTCAGATCAGGATACGGGAAATTCTTTCTACCAAGGGCTGAACGACAAAGCCGCAAGTCTGTA
TTCTCAGGCCGCCAGTGCGACTGCTTACATTGAACCGGAAATTCTGGCGATTCAGGAGGACAAGCTGCATCAGTTTATTC
TGGAAAAAGAAGAGCTTAAGGTTTACTCCCATGCCATTGAAGAAATTACAAAACAGCGTCCGCACGTGCTGAGCGAAAAA
GAAGAGGCCCTGCTTGCGGAAGCGTCAGAAGCGCTGTCTTCGCCTTCCAATACATTCAGTATTTTAAACAACGCCGATAT
TACGTTTCCGTCGATAAAAGATGAAAACGGCAAGGAAACTCAGATCACACACGGCAACTTTATTAATTTTCTGGAAAGCA
GCGATCGGGAAGTCCGTAAAAACGCCTTTAAAGCCGTATATAAAACATACGGACAGTATAAAAACACGATGGCGACTACA
CTCAGCGGCACTGTGAAAAAAGATAATTTCTACGCCCGTGTGAAAAAATACAAATCAGCACGGGAAGCGGCTTTATCCAA
TAATAACATCCCTGAAGAAGTTTATGATAACCTTATCAAAACGATCAATAAACATCTTCCGTTATTACACCGTTACATTG
ATCTGCGGAAAAAGGTGCTCGGCCTTGACGAAGTCCATAATTATGACCTGTACACACCGCTTGTAAAAGATTCGGGGATG
AAGGTCACATATGAGGAAGCAAAAGATTATATGCTCAAAGGGCTTGCTCCGTTAGGCGATGAATACGCGTCTATTTTAAA
AGAAGGACTTGAAAACCGCTGGGTCGATGTATACGAAAACAAAGGAAAACGCAGCGGTGCTTATTCGTCCGGTACATACG
GCACGAATCCGTACATCTTAATGAACTGGCACGACACTGTCAATAATCTGTTTACGCTCGTTCACGAGTTCGGCCATTCC
GTGCACAGCTACTATACGAGGAAATATCAGCCGTATCCGTATGGAAACTACAGCATTTTTGTCGCTGAAGTCGCTTCTAC
GACCAATGAAGCGCTGCTCGGTGAATATATGCTGAACAGCTTAAAAGATGAAAAACAGCGTCTGTATCTTCTCAACCACA
TGCTTGAAGGTTTCAGAGGCACAGTCTTCAGACAGACGATGTTCGCTGAATTTGAGCATCTGATTCATACGAAAGCGCAA
GAAGGCGAGCCGTTAACGCCTGAACTGCTGAACAAGCTTTATTATGATCTGAATAAAAAGTATTTCGGAGACAACATGGT
AATTGATGAAGAAATCAGCCTGGAATGGTCAAGAATTCCGCATTTCTATTACAATTATTATGTGTATCAATATGCGACAG
GCTACAGTGCGGCTCAAGCGCTGAGCAGCCAGATCTTAAAAGAAGGCAAGCCTGCGGTTGAGCGTTATACCAACTTCTTA
AAAGCCGGAAGCTCAGAATATCCGATCGACATCCTGAAAAAAGCGGGAGTCGATATGACATCGCCTGAACCGATCGAAGC
TGCCTGCAAAATGTTTGAAGAGAAACTGAATGAAATGGAAGAACTCCTTTCGAAAGTGAATCCTTCCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.832

97.537

0.486