Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   IL989_RS04055 Genome accession   NZ_CP062984
Coordinates   819986..820777 (+) Length   263 a.a.
NCBI ID   WP_193351461.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 814986..825777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS04030 (IL989_04030) - 816983..817867 (+) 885 WP_193351458.1 PhzF family phenazine biosynthesis isomerase -
  IL989_RS04035 (IL989_04035) - 817944..818528 (+) 585 WP_193351459.1 nitroreductase -
  IL989_RS04040 (IL989_04040) - 818565..818756 (-) 192 WP_013351432.1 YfhD family protein -
  IL989_RS04045 (IL989_04045) - 818827..818937 (-) 111 WP_003223230.1 YfhE family protein -
  IL989_RS04050 (IL989_04050) - 818995..819894 (-) 900 WP_193351460.1 TIGR01777 family oxidoreductase -
  IL989_RS04055 (IL989_04055) recX 819986..820777 (+) 792 WP_193351461.1 recombination regulator RecX Regulator
  IL989_RS04060 (IL989_04060) - 820784..821098 (+) 315 WP_071348576.1 YfhH family protein -
  IL989_RS04065 (IL989_04065) - 821241..822434 (+) 1194 WP_193351904.1 MFS transporter -
  IL989_RS04070 (IL989_04070) - 822473..822865 (-) 393 WP_193351462.1 DUF2606 family protein -
  IL989_RS04075 (IL989_04075) - 822828..823739 (-) 912 WP_193351463.1 serine protease -
  IL989_RS04080 (IL989_04080) - 823877..824029 (-) 153 WP_003155495.1 small, acid-soluble spore protein K -
  IL989_RS04085 (IL989_04085) - 824153..824422 (+) 270 WP_193351464.1 YfhJ family protein -
  IL989_RS04090 (IL989_04090) - 824555..825082 (+) 528 WP_193351465.1 SH3 domain-containing protein -
  IL989_RS04095 (IL989_04095) - 825168..825500 (+) 333 WP_193351466.1 SdpI family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 31023.26 Da        Isoelectric Point: 6.2753

>NTDB_id=492225 IL989_RS04055 WP_193351461.1 819986..820777(+) (recX) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEISHGDEVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPEMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKTHAEKAIRKYRYDGSYETGMK
VKQYLFRKGFSIDDIEQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=492225 IL989_RS04055 WP_193351461.1 819986..820777(+) (recX) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAACGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCA
GTCACGGCGATGAAGTGAAAAAAGCCTTTAACCGCGCCGTCGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGACCATTTGAAGAAAAAAGAAACACCTGAGATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCAGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGGCCTGACGTCCTGTTTCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATAAAGGAGACGCTCAGTGCGTTTACGTTTGACGAGCAGATACAGGAA
GCGCTGAAACATATCGGAAAAATCCTGAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCCCAGATGCA
GCTTCAGCGAAAAGGCTTCCCTTTCGACGTCATCAATGCCGCTCTGGAGCAGACGGAGTATGAGAATGATGACGAAGCTG
AGATGGAAGCTTTGAAGACTCATGCGGAAAAAGCAATCAGGAAATACCGCTATGACGGCAGTTATGAAACCGGGATGAAG
GTCAAGCAGTACTTATTCAGAAAAGGATTCTCGATTGACGACATTGAACAATTTTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.087

100

0.791