Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   G4Y79_RS07790 Genome accession   NZ_CP062983
Coordinates   1808436..1809821 (+) Length   461 a.a.
NCBI ID   WP_195172328.1    Uniprot ID   A0A7S8EC49
Organism   Phototrophicus methaneseepsis strain ZRK33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1803436..1814821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4Y79_RS07770 (G4Y79_07770) - 1803502..1804647 (-) 1146 WP_195172324.1 M24 family metallopeptidase -
  G4Y79_RS07775 (G4Y79_07775) - 1804917..1805528 (+) 612 WP_195172325.1 SH3 domain-containing protein -
  G4Y79_RS07780 (G4Y79_07780) - 1805536..1806213 (-) 678 WP_195172326.1 TetR/AcrR family transcriptional regulator -
  G4Y79_RS07785 (G4Y79_07785) - 1806405..1808222 (-) 1818 WP_195172327.1 sensor histidine kinase -
  G4Y79_RS07790 (G4Y79_07790) radA 1808436..1809821 (+) 1386 WP_195172328.1 DNA repair protein RadA Machinery gene
  G4Y79_RS07795 (G4Y79_07795) - 1809881..1810603 (-) 723 WP_195172329.1 hypothetical protein -
  G4Y79_RS07800 (G4Y79_07800) dnaN 1810809..1811939 (-) 1131 WP_195172330.1 DNA polymerase III subunit beta -
  G4Y79_RS07805 (G4Y79_07805) - 1812289..1812684 (+) 396 WP_228845436.1 thioesterase family protein -
  G4Y79_RS07810 (G4Y79_07810) - 1812826..1813998 (-) 1173 WP_195172331.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50064.95 Da        Isoelectric Point: 7.3048

>NTDB_id=492201 G4Y79_RS07790 WP_195172328.1 1808436..1809821(+) (radA) [Phototrophicus methaneseepsis strain ZRK33]
MPKTRSVYICENCGWQGPRAMGRCPNCGEFGTIVEQVEAAPRKKSAKQASRQVVGVPRSQPRRLAEVDMAQEDRLAVPMQ
EFSRVLGGGLVPGSITLLGGEPGAGKSTLMTQFAGIMANSHGRVLYVSGEESARQIKMRAERLNIEAHDLFLLTETNLGT
ILEHVQEIAPEILIIDSIQTTYTEELDSSPGLVSQVRECASRLQALAKTTGISVFMIGHVNKEGSIAGPRVLEHIVDTVL
YLEGDPFQTFRLLRSVKNRFGATSEVGVFEMVGVGMIEVPNPSEAFLAERVINAPGSAIAVTMEGTRPLLVEVQALTNPT
AFGNARRTPNGVDMSRLLLVSAVLSKRMGLRLYEQDIFVNVVGGLKVSEPASDLAMALAIASNYYDKALPADVAVVGEIG
LSGEVRTVNQLGMRLNEASKIGFKRVLMPKMRRKLEDVPKGLELIQVRNMVEAFNALIPRD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=492201 G4Y79_RS07790 WP_195172328.1 1808436..1809821(+) (radA) [Phototrophicus methaneseepsis strain ZRK33]
ATGCCTAAAACACGCAGCGTATATATTTGCGAAAATTGTGGTTGGCAAGGGCCGCGTGCAATGGGCCGCTGCCCCAACTG
TGGTGAATTCGGTACGATTGTTGAACAGGTCGAAGCAGCACCGCGCAAGAAAAGCGCTAAGCAGGCCAGTCGGCAGGTCG
TAGGGGTGCCGCGCAGCCAGCCGCGCCGCCTTGCAGAAGTCGATATGGCCCAGGAAGATCGCCTCGCTGTGCCGATGCAG
GAATTCAGCCGCGTATTAGGTGGCGGCCTTGTCCCAGGGAGCATTACGCTGTTGGGTGGTGAACCCGGCGCAGGCAAAAG
CACACTCATGACGCAGTTCGCCGGGATTATGGCGAATTCGCACGGACGCGTCTTGTATGTGAGCGGCGAAGAAAGCGCCC
GCCAGATCAAGATGCGTGCTGAGCGGCTGAATATCGAAGCACACGACCTCTTCTTGTTGACGGAGACGAATCTCGGGACC
ATTCTGGAGCATGTCCAGGAGATTGCCCCGGAAATCCTCATTATTGATAGTATCCAGACGACCTATACGGAAGAACTGGA
CAGCTCGCCCGGTTTGGTCAGCCAGGTGCGTGAATGTGCCAGCCGCTTGCAAGCGCTCGCCAAGACGACAGGCATTAGCG
TCTTCATGATCGGCCATGTGAATAAAGAGGGCAGCATCGCCGGGCCGCGCGTCCTGGAGCATATTGTCGATACCGTGCTG
TATCTGGAAGGCGATCCTTTCCAGACTTTCCGCCTACTGCGCAGTGTGAAAAACCGCTTCGGCGCGACGAGTGAAGTGGG
TGTGTTCGAGATGGTTGGCGTCGGCATGATTGAAGTGCCGAATCCCAGCGAGGCTTTCTTAGCAGAGCGCGTCATCAATG
CCCCAGGGAGCGCAATCGCCGTCACGATGGAAGGCACGCGCCCCTTATTGGTCGAAGTACAGGCCCTGACGAATCCGACA
GCCTTCGGCAATGCGCGCCGCACACCGAATGGCGTCGATATGAGCCGCCTGCTACTGGTCAGCGCAGTGCTGAGCAAGCG
CATGGGCTTGCGGCTGTATGAGCAGGATATCTTCGTGAATGTGGTTGGTGGCCTCAAGGTGAGTGAGCCAGCCAGCGATC
TGGCGATGGCCCTGGCAATAGCCAGCAACTATTATGATAAGGCCCTGCCTGCGGATGTGGCTGTGGTTGGTGAAATCGGC
CTGAGTGGTGAAGTGCGCACGGTCAATCAGCTTGGGATGCGCTTGAACGAAGCGTCAAAGATTGGCTTTAAGCGGGTGTT
GATGCCTAAAATGCGCCGTAAGCTTGAAGACGTGCCCAAGGGCCTGGAGCTCATCCAGGTGCGTAACATGGTCGAGGCCT
TTAACGCCCTAATACCCAGGGACTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(62-224)

Subunit ChlI of Mg-chelatase (ChlI)

(346-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S8EC49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

50

99.349

0.497
  radA Streptococcus pneumoniae Rx1

50

99.349

0.497
  radA Streptococcus pneumoniae D39

50

99.349

0.497
  radA Streptococcus pneumoniae TIGR4

50

99.349

0.497
  radA Streptococcus mitis NCTC 12261

50

99.349

0.497
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

99.132

0.492
  radA Streptococcus mitis SK321

52.093

93.275

0.486