Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   H4O27_RS10945 Genome accession   NZ_CP062976
Coordinates   2248793..2250499 (-) Length   568 a.a.
NCBI ID   WP_165010958.1    Uniprot ID   -
Organism   Neisseria yangbaofengii strain ZJ785     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2243793..2255499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4O27_RS10910 - 2244787..2245095 (+) 309 WP_165010422.1 IS630 transposase-related protein -
  H4O27_RS10915 - 2245133..2245609 (+) 477 WP_226883549.1 IS630 family transposase -
  H4O27_RS13640 - 2245726..2246007 (+) 282 WP_371870284.1 IS630 transposase-related protein -
  H4O27_RS10925 - 2245974..2246607 (-) 634 Protein_2136 transposase -
  H4O27_RS13200 - 2246614..2246763 (-) 150 WP_226883400.1 hypothetical protein -
  H4O27_RS13205 - 2246935..2247141 (-) 207 Protein_2138 helix-turn-helix domain-containing protein -
  H4O27_RS10935 rarD 2247216..2248118 (-) 903 WP_165010960.1 EamA family transporter RarD -
  H4O27_RS10940 - 2248347..2248613 (-) 267 WP_100562778.1 DUF3079 domain-containing protein -
  H4O27_RS10945 pilA 2248793..2250499 (-) 1707 WP_165010958.1 signal recognition particle-docking protein FtsY Machinery gene
  H4O27_RS10950 efeB 2250691..2251959 (-) 1269 WP_165010956.1 iron uptake transporter deferrochelatase/peroxidase subunit -
  H4O27_RS10955 efeO 2252387..2253547 (-) 1161 WP_165010953.1 iron uptake system protein EfeO -
  H4O27_RS10960 efeU 2253604..2254419 (-) 816 WP_165010951.1 iron uptake transporter permease EfeU -

Sequence

Protein


Download         Length: 568 a.a.        Molecular weight: 61169.55 Da        Isoelectric Point: 4.2249

>NTDB_id=492196 H4O27_RS10945 WP_165010958.1 2248793..2250499(-) (pilA) [Neisseria yangbaofengii strain ZJ785]
MFDFFRRKKQENPAPEETVKPALQHSEQTAAGEPAQSVEEMLAALENAFAKAAAEKSQAVPPTEEISVENIENQSVEAEI
LAKQTQTETLIDDVQAEAETSAEMPFERIAAQIKVADDVSIKDRNAEEIVLSDDGKVVIDYVQVPEGTAVVSVTPEQAEA
IADEHENTVEPSEAVPSAESHVRPQAAEEAEIQTWETTFPEPETEQTQAEEAGPAEAVNTQEHIEIEEVKLDESPEETPS
KSVLATAVTTDTAAQAVAEEDHAQNKLSWASRLKQGLAKSRDKMAKSLAGVFGGGKIDEDLYEELETVLITSDMGMEATN
SLMKDVRDRVSLKGLKDGGELRGALKDAIYDLIKPLEQPLVLPESNEPFVIMLAGINGAGKTTSIGKLAKYFQSQGKSVL
LAAGDTFRAAAREQLQEWGERNNVTVISQSTGDSAAVCFDAVQAAKARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQK
AIPDAPHEIIVVLDANIGQNAVNQVKAFDEALGLTGLIVTKLDGTAKGGILAALAGSRPIPVRYIGVGERIDDLRPFDAR
AFVDALLD

Nucleotide


Download         Length: 1707 bp        

>NTDB_id=492196 H4O27_RS10945 WP_165010958.1 2248793..2250499(-) (pilA) [Neisseria yangbaofengii strain ZJ785]
ATGTTCGATTTCTTCCGCCGCAAAAAACAGGAAAACCCTGCTCCCGAAGAAACAGTTAAGCCCGCACTTCAGCACAGCGA
GCAAACCGCCGCCGGCGAGCCGGCCCAATCAGTAGAAGAAATGCTGGCGGCGCTGGAAAATGCGTTTGCCAAGGCAGCGG
CGGAAAAATCGCAGGCCGTGCCGCCGACTGAAGAAATTTCAGTTGAAAATATTGAAAATCAATCAGTTGAAGCAGAAATT
TTGGCAAAACAAACGCAAACCGAAACACTGATTGATGACGTTCAAGCTGAAGCAGAAACGTCTGCAGAAATGCCGTTTGA
GCGCATTGCAGCGCAAATCAAAGTGGCGGATGATGTCTCTATTAAAGATAGGAACGCGGAAGAAATCGTCTTAAGCGACG
ATGGCAAAGTGGTGATTGATTATGTACAAGTGCCGGAAGGCACTGCAGTGGTTTCGGTGACCCCGGAGCAGGCAGAAGCC
ATTGCTGATGAGCATGAAAACACTGTTGAACCTTCCGAAGCCGTGCCATCAGCAGAATCGCACGTTCGGCCGCAAGCAGC
AGAAGAAGCGGAAATCCAGACTTGGGAAACCACCTTCCCTGAACCGGAAACCGAACAAACCCAAGCAGAGGAAGCCGGGC
CTGCAGAAGCGGTTAATACGCAGGAACATATTGAAATTGAAGAAGTTAAGTTGGATGAATCACCTGAAGAAACGCCGTCT
AAAAGCGTATTGGCTACTGCGGTAACGACGGACACAGCCGCGCAAGCCGTGGCGGAAGAAGACCATGCGCAAAACAAATT
AAGCTGGGCTTCGCGCTTGAAACAGGGATTGGCCAAATCGCGCGACAAAATGGCCAAATCGCTGGCGGGTGTGTTCGGCG
GCGGAAAAATCGACGAAGATTTGTATGAAGAGTTGGAAACCGTGCTGATTACCAGCGATATGGGGATGGAAGCGACCAAT
TCTTTGATGAAAGACGTGCGCGACCGTGTAAGCTTGAAAGGCTTGAAAGACGGCGGAGAATTGCGCGGTGCCTTGAAAGA
TGCCATTTACGATTTAATTAAGCCTTTGGAGCAGCCGCTGGTGCTGCCCGAAAGCAATGAGCCGTTTGTGATTATGCTGG
CGGGCATCAACGGTGCGGGTAAAACCACATCCATCGGCAAGCTGGCGAAATATTTCCAATCGCAGGGCAAATCGGTGCTG
CTGGCGGCTGGCGACACCTTCCGTGCGGCGGCGCGCGAGCAGTTGCAGGAATGGGGCGAGCGCAACAACGTCACCGTGAT
TTCACAATCCACCGGTGATTCGGCGGCAGTATGTTTCGATGCGGTGCAGGCGGCCAAAGCGCGCGGCATCGATATTGTAC
TGGCCGATACTGCCGGCCGCCTGCCGACTCAATTGCACCTGATGGAAGAAATCAAAAAAGTGAAACGCGTGCTGCAAAAA
GCCATACCCGATGCGCCGCATGAAATCATCGTGGTGTTGGATGCCAACATCGGCCAAAATGCGGTCAACCAAGTGAAAGC
CTTCGACGAAGCTTTGGGTTTGACCGGCTTGATTGTTACCAAACTCGACGGCACGGCCAAAGGCGGCATTCTGGCTGCGC
TGGCCGGCAGCCGCCCGATTCCTGTGCGCTATATCGGTGTAGGCGAACGCATCGATGACTTACGCCCGTTTGACGCACGG
GCGTTTGTAGATGCGCTGTTGGATTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(368-567)

SRP54-type protein, helical bundle domain (SRP54_N)

(283-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

91.475

53.697

0.491