Detailed information    

insolico Bioinformatically predicted

Overview

Name   tpc   Type   Machinery gene
Locus tag   H4O27_RS09055 Genome accession   NZ_CP062976
Coordinates   1861086..1862123 (-) Length   345 a.a.
NCBI ID   WP_165008224.1    Uniprot ID   -
Organism   Neisseria yangbaofengii strain ZJ785     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1856086..1867123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4O27_RS09035 - 1857047..1858240 (+) 1194 WP_165008216.1 glycosyltransferase -
  H4O27_RS09040 greB 1858364..1858855 (-) 492 WP_165008218.1 transcription elongation factor GreB -
  H4O27_RS09045 purF 1858947..1860482 (-) 1536 WP_165008220.1 amidophosphoribosyltransferase -
  H4O27_RS09050 - 1860581..1861093 (-) 513 WP_165008222.1 CvpA family protein -
  H4O27_RS09055 tpc 1861086..1862123 (-) 1038 WP_165008224.1 SPOR domain-containing protein Machinery gene
  H4O27_RS09060 folC 1862136..1863413 (-) 1278 WP_165008226.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  H4O27_RS09065 - 1863477..1863920 (-) 444 WP_165008228.1 protein YgfX -
  H4O27_RS09070 - 1863924..1864283 (-) 360 WP_165008230.1 hypothetical protein -
  H4O27_RS09075 - 1864351..1865079 (-) 729 WP_165008232.1 amino acid ABC transporter ATP-binding protein -
  H4O27_RS09080 - 1865211..1865862 (-) 652 Protein_1769 IS1595 family transposase -
  H4O27_RS09085 rsmA 1865989..1866768 (-) 780 WP_165008234.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37029.75 Da        Isoelectric Point: 10.1499

>NTDB_id=492191 H4O27_RS09055 WP_165008224.1 1861086..1862123(-) (tpc) [Neisseria yangbaofengii strain ZJ785]
MSDDKQKEVLTGYEQLKRRNRRRLVMTSGLVVVAGILLASVLSAGGDEEKAAAPTAAVAQNDAQGDAANAAVLEPSNKEE
AQAAAQEQAAEKSSEPEQPVEVLRPAAATPPQDIGAPLVLINDKLVDSDIKGLEESERIRKAEEEKRAAEEQKAEARRQR
LAEQRAAKRAEEKRLAAEKEAAKKRAVAAKAEKSERDAEVERKQAEKAAAERKAKQAEEKKAAAAKAKAETDKKAAAAKA
KETDKKAAAKKAEPATPKPAEKAADIGSKGQKAAIQAGYSDKERAQSLQRKMKAAGINATISEIKTDKGVVYRVKSNSYK
NRQEAAKDLEKLRSKNGIAGQIVDE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=492191 H4O27_RS09055 WP_165008224.1 1861086..1862123(-) (tpc) [Neisseria yangbaofengii strain ZJ785]
ATGTCTGACGATAAGCAAAAAGAAGTTTTAACCGGTTATGAGCAGCTCAAACGCCGCAACCGCCGCCGCTTGGTGATGAC
GTCAGGGTTGGTCGTGGTTGCCGGTATTCTGTTGGCTTCTGTATTGAGTGCGGGTGGCGACGAAGAAAAAGCAGCCGCAC
CCACGGCCGCCGTAGCGCAAAATGATGCGCAAGGCGATGCCGCCAATGCTGCTGTGTTGGAGCCGAGCAATAAGGAAGAA
GCGCAAGCGGCTGCGCAGGAGCAAGCTGCCGAAAAAAGCAGCGAGCCTGAGCAACCGGTGGAAGTGTTGAGACCTGCCGC
CGCTACACCGCCGCAAGACATCGGTGCGCCGTTGGTGTTGATTAACGATAAATTGGTTGACAGTGACATCAAAGGCTTGG
AAGAGTCGGAGCGCATTCGCAAAGCCGAAGAAGAAAAACGCGCGGCGGAAGAGCAGAAAGCCGAAGCACGCCGCCAGCGT
TTGGCTGAACAGCGTGCGGCCAAACGTGCCGAAGAAAAACGCTTGGCAGCCGAAAAAGAAGCGGCTAAGAAACGGGCTGT
GGCGGCCAAGGCTGAAAAATCGGAACGTGATGCAGAAGTCGAGCGCAAACAGGCAGAAAAAGCAGCTGCCGAGCGTAAAG
CCAAACAAGCTGAAGAGAAAAAAGCAGCTGCGGCCAAAGCCAAAGCGGAAACCGACAAAAAAGCAGCCGCTGCCAAAGCA
AAAGAAACCGACAAAAAAGCGGCCGCTAAAAAAGCGGAACCGGCTACGCCTAAGCCGGCCGAAAAAGCAGCCGATATCGG
TTCTAAAGGCCAAAAAGCCGCCATTCAGGCCGGTTATTCCGATAAAGAACGCGCCCAAAGCCTGCAACGCAAAATGAAGG
CGGCCGGTATCAATGCCACCATCAGCGAAATCAAAACCGATAAAGGTGTGGTTTACCGTGTGAAATCAAACTCATATAAG
AATCGCCAAGAAGCTGCGAAAGATTTGGAAAAATTGCGTTCTAAAAACGGCATTGCAGGACAGATCGTGGATGAGTAA

Domains

Predicted by InterproScan.

SPOR domain (SPOR)

(273-343)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

45.777

100

0.487