Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   H4O27_RS07115 Genome accession   NZ_CP062976
Coordinates   1465578..1466957 (+) Length   459 a.a.
NCBI ID   WP_165009757.1    Uniprot ID   -
Organism   Neisseria yangbaofengii strain ZJ785     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1419586..1468200 1465578..1466957 within 0


Gene organization within MGE regions


Location: 1419586..1468200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4O27_RS06780 - 1419586..1420272 (-) 687 WP_165009643.1 Sir2 family NAD-dependent protein deacetylase -
  H4O27_RS06785 - 1420349..1420963 (-) 615 WP_165009645.1 glutathione S-transferase family protein -
  H4O27_RS06790 - 1421064..1421264 (-) 201 WP_165009647.1 hypothetical protein -
  H4O27_RS06795 - 1421539..1421979 (-) 441 WP_165009649.1 phage virion morphogenesis protein -
  H4O27_RS06800 - 1421983..1422888 (-) 906 WP_165009651.1 phage minor head protein -
  H4O27_RS06805 - 1422885..1424390 (-) 1506 WP_165009653.1 DUF935 domain-containing protein -
  H4O27_RS06810 - 1424561..1426078 (-) 1518 WP_165009655.1 terminase large subunit domain-containing protein -
  H4O27_RS06815 - 1426075..1426620 (-) 546 WP_165009657.1 DUF3486 family protein -
  H4O27_RS06820 - 1426623..1426940 (-) 318 WP_165009659.1 hypothetical protein -
  H4O27_RS06825 - 1426937..1427257 (-) 321 WP_165009661.1 hypothetical protein -
  H4O27_RS06830 - 1427260..1427472 (-) 213 WP_165009663.1 TraR/DksA family transcriptional regulator -
  H4O27_RS06835 - 1427465..1427677 (-) 213 WP_165009665.1 hypothetical protein -
  H4O27_RS06840 - 1427704..1428057 (-) 354 WP_165009667.1 hypothetical protein -
  H4O27_RS06845 - 1428041..1428295 (-) 255 WP_165009759.1 hypothetical protein -
  H4O27_RS06850 - 1428295..1428483 (-) 189 WP_165009669.1 hypothetical protein -
  H4O27_RS06855 - 1428493..1428990 (-) 498 WP_165009671.1 glycoside hydrolase family 108 protein -
  H4O27_RS06860 - 1429070..1429441 (-) 372 WP_165009673.1 hypothetical protein -
  H4O27_RS06865 - 1429434..1429679 (-) 246 WP_165009675.1 hypothetical protein -
  H4O27_RS06870 - 1429700..1430575 (-) 876 WP_165009677.1 hypothetical protein -
  H4O27_RS06875 - 1430643..1431197 (-) 555 WP_165009679.1 hypothetical protein -
  H4O27_RS06880 - 1431308..1431700 (-) 393 WP_165009681.1 helix-turn-helix domain-containing protein -
  H4O27_RS06885 - 1431814..1432170 (-) 357 WP_165009683.1 hypothetical protein -
  H4O27_RS06890 - 1432220..1432456 (+) 237 WP_165009685.1 DNA-binding protein -
  H4O27_RS06895 - 1432481..1432768 (+) 288 WP_165009687.1 DNA-binding protein -
  H4O27_RS06900 - 1432820..1433680 (+) 861 WP_165009689.1 hypothetical protein -
  H4O27_RS06905 - 1433682..1435463 (+) 1782 WP_165009691.1 DDE-type integrase/transposase/recombinase -
  H4O27_RS06910 - 1435504..1436646 (+) 1143 WP_165009693.1 ExeA family protein -
  H4O27_RS06915 - 1436646..1436849 (+) 204 WP_165009695.1 hypothetical protein -
  H4O27_RS06920 - 1436846..1437058 (+) 213 WP_165009696.1 hypothetical protein -
  H4O27_RS06925 - 1437243..1437494 (+) 252 WP_165009698.1 hypothetical protein -
  H4O27_RS06930 - 1437491..1438000 (+) 510 WP_165009700.1 hypothetical protein -
  H4O27_RS06935 - 1437984..1438448 (+) 465 WP_165009702.1 hypothetical protein -
  H4O27_RS06940 - 1438445..1438597 (+) 153 WP_165009704.1 hypothetical protein -
  H4O27_RS06945 - 1438590..1439195 (+) 606 WP_165009706.1 DUF3164 family protein -
  H4O27_RS06950 - 1439249..1439539 (+) 291 WP_165009708.1 HU family DNA-binding protein -
  H4O27_RS06955 - 1439717..1440193 (+) 477 WP_165009710.1 gp16 family protein -
  H4O27_RS06960 - 1440186..1440527 (+) 342 WP_165009712.1 Mor transcription activator family protein -
  H4O27_RS06965 - 1440742..1441854 (+) 1113 WP_165009714.1 2-oxoacid:acceptor oxidoreductase -
  H4O27_RS06970 - 1441879..1442817 (+) 939 WP_165009716.1 hypothetical protein -
  H4O27_RS06975 - 1442887..1443159 (+) 273 WP_165009718.1 Gp49 family protein -
  H4O27_RS06980 - 1443152..1443487 (+) 336 WP_165009720.1 capsid cement protein -
  H4O27_RS06985 - 1443490..1443789 (+) 300 WP_165009722.1 hypothetical protein -
  H4O27_RS06990 - 1443789..1444235 (+) 447 WP_165009724.1 gp436 family protein -
  H4O27_RS06995 - 1444235..1444738 (+) 504 WP_165009726.1 Gp37 family protein -
  H4O27_RS07000 - 1444738..1446147 (+) 1410 WP_165009728.1 phage tail sheath subtilisin-like domain-containing protein -
  H4O27_RS07005 - 1446159..1446677 (+) 519 WP_165009730.1 phage major tail tube protein -
  H4O27_RS07010 - 1446788..1447078 (+) 291 WP_165009732.1 phage tail assembly protein -
  H4O27_RS07015 - 1447125..1447250 (+) 126 WP_226883528.1 GpE family phage tail protein -
  H4O27_RS07020 - 1447264..1447443 (-) 180 WP_100563528.1 hypothetical protein -
  H4O27_RS07025 - 1447484..1450135 (+) 2652 WP_165009733.1 phage tail tape measure protein -
  H4O27_RS07030 - 1450135..1451031 (+) 897 WP_165009735.1 phage tail protein -
  H4O27_RS07035 - 1451028..1451258 (+) 231 WP_165009737.1 tail protein X -
  H4O27_RS07040 - 1451258..1452361 (+) 1104 WP_165009761.1 phage late control D family protein -
  H4O27_RS07045 - 1452351..1452935 (+) 585 WP_226883367.1 phage baseplate assembly protein V -
  H4O27_RS07050 - 1453014..1453391 (+) 378 WP_165009739.1 GPW/gp25 family protein -
  H4O27_RS07055 - 1453382..1454524 (+) 1143 WP_165009741.1 baseplate J/gp47 family protein -
  H4O27_RS07060 - 1454528..1455106 (+) 579 WP_165009743.1 phage tail protein -
  H4O27_RS13055 - 1455106..1456950 (+) 1845 WP_226883368.1 phage tail protein -
  H4O27_RS07070 - 1457011..1457757 (+) 747 WP_165009745.1 hypothetical protein -
  H4O27_RS07075 - 1457832..1458260 (+) 429 WP_226883369.1 hypothetical protein -
  H4O27_RS07080 - 1458269..1458583 (+) 315 WP_165009747.1 hypothetical protein -
  H4O27_RS07085 - 1458583..1461741 (+) 3159 WP_165009749.1 hypothetical protein -
  H4O27_RS07090 - 1461920..1462027 (+) 108 WP_123796416.1 Com family DNA-binding transcriptional regulator -
  H4O27_RS07095 - 1462080..1462850 (+) 771 WP_165009751.1 DNA adenine methylase -
  H4O27_RS07100 - 1462874..1463200 (-) 327 WP_165009753.1 hypothetical protein -
  H4O27_RS07105 - 1463601..1463747 (-) 147 WP_165009755.1 hypothetical protein -
  H4O27_RS07110 - 1463861..1465288 (-) 1428 WP_226883370.1 acyl-CoA dehydrogenase family protein -
  H4O27_RS07115 radA 1465578..1466957 (+) 1380 WP_165009757.1 DNA repair protein RadA Machinery gene
  H4O27_RS07120 - 1467056..1467403 (+) 348 WP_193004221.1 helix-turn-helix domain-containing protein -
  H4O27_RS07125 - 1467400..1468200 (+) 801 WP_193004223.1 IS3 family transposase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49396.88 Da        Isoelectric Point: 6.8212

>NTDB_id=492183 H4O27_RS07115 WP_165009757.1 1465578..1466957(+) (radA) [Neisseria yangbaofengii strain ZJ785]
MAKAPKTVYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAADISSVQSLSAVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQTRKVLYVSGEESAQQVALRAQRLDLPTDGVNLLAEIRMEAIQTA
LKQHEPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTETGLKGVSNPSAIFLASYRDDVPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLSMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLEIFGVGSLQEAIDVCRNARD

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=492183 H4O27_RS07115 WP_165009757.1 1465578..1466957(+) (radA) [Neisseria yangbaofengii strain ZJ785]
ATGGCAAAAGCACCGAAAACCGTTTACCAATGCACCGAATGCGGCGGCACATCGCCCAAATGGCAAGGCAAATGCCCGCA
TTGCGGCGAATGGAACACTTTGCAGGAAAGCTTGGCTGCACCCGAACCGAAAAACGCGCGTTTCCAATCATGGGCGGCGG
ATATCTCGAGTGTGCAGTCCTTGTCTGCCGTGACTGCAACCGAAGTGCCGCGCAACCCAACCGGTATGGGCGAACTCGAC
CGTGTACTGGGCGGCGGTTTGGTTGATGGCGCAGTGATTTTGCTGGGCGGCGATCCGGGCATTGGTAAATCGACCCTGCT
GCTGCAAACCATTGCCAAAATGGCGCAAACGCGCAAGGTGCTGTATGTATCGGGCGAAGAATCGGCACAACAGGTCGCCT
TGCGTGCGCAGCGTTTGGACTTACCCACCGACGGCGTGAATCTGTTGGCCGAAATCCGCATGGAAGCGATTCAGACGGCC
TTAAAGCAGCACGAGCCGGAAGTAGTCGTCATCGACTCGATTCAAACCATGTATTCCGACCAAATTACGTCCGCTCCCGG
CTCGGTGTCTCAGGTACGCGAATGTGCCGCGCAACTGACGCGTATGGCCAAGCAGATGGGCATCGCTATGATTTTGGTCG
GCCACGTCACCAAAGACGGCGCAATTGCCGGCCCGCGCGTGTTGGAACACATGGTCGATACGGTGCTGTATTTCGAAGGT
GACCAGCATTCCAATTACCGCATGATACGCGCGATTAAAAACCGATTCGGTGCAGCCAATGAATTAGGTGTATTTGCGAT
GACGGAAACAGGCTTGAAAGGCGTGTCAAACCCGTCGGCCATTTTTTTGGCGAGCTACCGCGACGATGTGCCGGGTTCGT
GCGTATTGGTCACACAGGAAGGCTCACGGCCTTTATTGGTGGAAATTCAAGCCTTGGTTGACGATGCCCACGGTTTTACG
CCCAAACGCCTCACCGTCGGCCTGGAACAAAACCGCCTGTCCATGCTGCTGGCGGTGTTAAACCGCCACGGCGGCATCGC
CTGCTTCGATCAAGATGTGTTCCTCAACGCCGTCGGTGGCGTGAAAATCGGCGAACCCGCAGCCGATTTGGCCGTGATTC
TCGCCATGCTTTCCAGTTTCCGTAATCGTCCTTTACCGGAAAAAATGGTGGCGTTCGGCGAAATCGGTTTGAGCGGCGAA
GTGCGTCCGGTCGCCCGCGGACAGGAACGGCTCAAAGAGGCGGAAAAACTGGGCTTCAAACGCGCCATCGTGCCAAAAGC
CAATATGCCGCGCAATGCGAAAGAATTTCCGAATTTGGAGATTTTCGGCGTAGGCAGTTTACAGGAAGCAATTGATGTCT
GCCGCAATGCACGGGATTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(80-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.11

99.129

0.497
  radA Streptococcus mitis NCTC 12261

47.672

98.257

0.468
  radA Streptococcus pneumoniae Rx1

47.345

98.475

0.466
  radA Streptococcus pneumoniae D39

47.345

98.475

0.466
  radA Streptococcus pneumoniae R6

47.345

98.475

0.466
  radA Streptococcus pneumoniae TIGR4

47.345

98.475

0.466
  radA Streptococcus mitis SK321

47.228

98.257

0.464