Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   H4O27_RS05825 Genome accession   NZ_CP062976
Coordinates   1210181..1211920 (+) Length   579 a.a.
NCBI ID   WP_165010874.1    Uniprot ID   -
Organism   Neisseria yangbaofengii strain ZJ785     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1205181..1216920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4O27_RS05800 - 1205376..1206905 (+) 1530 WP_165010883.1 SurA N-terminal domain-containing protein -
  H4O27_RS05805 recR 1206986..1207591 (+) 606 WP_165010881.1 recombination mediator RecR -
  H4O27_RS05810 - 1207659..1207946 (-) 288 WP_165010879.1 hypothetical protein -
  H4O27_RS05815 - 1208165..1209415 (+) 1251 WP_165010878.1 lipoprotein-releasing ABC transporter permease subunit -
  H4O27_RS05820 lolD 1209408..1210088 (+) 681 WP_165010876.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  H4O27_RS05825 recD 1210181..1211920 (+) 1740 WP_165010874.1 exodeoxyribonuclease V subunit alpha Machinery gene
  H4O27_RS05830 - 1212303..1213436 (+) 1134 WP_165010872.1 hypothetical protein -
  H4O27_RS05835 - 1213534..1213935 (-) 402 WP_165010870.1 RNA-binding S4 domain-containing protein -
  H4O27_RS05840 - 1214156..1215115 (+) 960 WP_165010867.1 acetyl-CoA carboxylase carboxyltransferase subunit alpha -
  H4O27_RS05845 tilS 1215200..1216528 (+) 1329 WP_165010865.1 tRNA lysidine(34) synthetase TilS -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 64103.41 Da        Isoelectric Point: 6.8487

>NTDB_id=492180 H4O27_RS05825 WP_165010874.1 1210181..1211920(+) (recD) [Neisseria yangbaofengii strain ZJ785]
MNAPIDLSQAAALAATRFLQQHAPKDAAVVAPYVEALFSALQNGHSFIWVTDNEAAALKRATLVVGSDSETPLILDGRRL
FLGRLWQLEYDLAVEIKRLATASIDDVDWLQASQNLQNWFAEKGSEGQRDAAGLALLQAFMLITGGPGTGKTTTVAKLLG
LICDNATGLPRIALAAPTGKAAAHMARSLHRALDGFDLPGRIKQHLLLLEGQTVHRLLKLRPPQMQPAFHVQRPLPLDVL
VVDEASMLDLSLLLQLLKAIPSGCRVIFLGDEFQLPSVGVGAVLAALSRETVLDEDTHRRLNEYLPQHAFKVAENPPALS
QNIAHLHVSHRFGADSGIGCLARAVVSGESETAWAQFERFPDELKVLHADMKHQAELLYHKHEKYWRAVSSGNVALAFGH
AADVVVLTAWRQDAENFNQAYFRHLQRQQRISGDMPWFDGQMIMVTRNDYALDLFNGDIGLVMRDSGSANGLAAYFPFAD
GFRKIPISRLPTFETAFAMTVHKSQGSEYREVWLLPPSLDTANESDDVLNCLNNALLYTGITRARERFVFWGSKKIFEWA
VKTQKKRHTALDEMINALF

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=492180 H4O27_RS05825 WP_165010874.1 1210181..1211920(+) (recD) [Neisseria yangbaofengii strain ZJ785]
ATGAATGCTCCCATCGATTTGAGCCAGGCAGCGGCTTTGGCTGCTACCCGGTTTTTGCAACAGCACGCGCCCAAAGATGC
GGCAGTGGTCGCACCTTATGTTGAAGCCTTGTTCAGCGCACTGCAAAACGGGCATTCGTTTATTTGGGTCACTGATAACG
AAGCGGCAGCCTTGAAGCGTGCCACGTTAGTGGTTGGCTCCGATAGCGAAACGCCGTTGATATTGGACGGGCGGCGTTTG
TTTTTAGGCAGGCTTTGGCAGTTAGAATATGACTTGGCCGTGGAAATCAAGCGGTTGGCAACAGCATCCATCGATGATGT
TGATTGGCTGCAGGCTTCGCAGAATCTGCAAAACTGGTTTGCCGAAAAAGGCAGCGAAGGGCAGCGAGATGCTGCGGGTT
TGGCTTTGCTGCAAGCCTTTATGCTGATTACCGGCGGCCCGGGCACCGGCAAAACGACCACAGTTGCCAAATTATTGGGG
CTGATTTGCGACAATGCCACCGGTTTACCGCGCATCGCCTTGGCCGCCCCCACCGGTAAAGCGGCTGCGCATATGGCACG
CTCGCTGCATCGTGCCTTAGACGGCTTTGATTTGCCCGGGCGCATCAAGCAGCATTTATTGCTCTTGGAAGGCCAAACCG
TGCACCGCCTGTTGAAACTTCGCCCACCGCAAATGCAGCCGGCCTTTCATGTACAGCGGCCCTTGCCTTTAGACGTGTTG
GTGGTGGATGAAGCATCAATGCTGGATTTATCGCTGTTGCTGCAATTGCTCAAAGCCATTCCGAGTGGCTGCCGCGTTAT
CTTTTTGGGGGATGAATTTCAATTACCGTCGGTTGGCGTGGGCGCGGTATTGGCAGCTTTATCGCGCGAAACCGTTTTAG
ATGAAGACACCCATCGCCGTTTAAACGAATATCTGCCGCAGCATGCATTTAAAGTTGCCGAAAATCCGCCGGCTTTGTCG
CAAAACATTGCCCATTTGCATGTCAGTCACCGCTTTGGTGCAGACAGCGGCATCGGTTGCTTGGCGCGGGCGGTGGTTTC
GGGCGAAAGTGAAACGGCATGGGCGCAGTTTGAACGCTTCCCTGATGAATTGAAGGTATTACATGCCGACATGAAACATC
AAGCCGAATTGTTGTATCACAAGCATGAGAAATACTGGCGGGCAGTCTCGAGCGGTAATGTAGCGCTGGCATTCGGCCAT
GCGGCAGATGTGGTGGTGTTAACGGCTTGGCGCCAAGACGCGGAAAATTTTAATCAGGCTTATTTCCGCCATTTGCAGCG
TCAACAGCGCATATCCGGCGATATGCCGTGGTTTGACGGCCAGATGATCATGGTCACGCGCAACGATTATGCATTGGATT
TGTTTAATGGCGATATCGGCTTGGTTATGCGGGATAGCGGATCGGCCAATGGTTTGGCGGCGTATTTCCCGTTTGCGGAC
GGCTTCAGGAAAATCCCCATCAGCCGTCTGCCGACTTTTGAAACGGCGTTTGCCATGACTGTACACAAAAGCCAGGGTTC
GGAATATCGGGAAGTATGGTTGCTGCCGCCAAGTCTTGATACGGCGAATGAAAGTGATGATGTGCTAAACTGCCTGAATA
ATGCGCTGTTGTACACAGGTATCACCCGTGCGCGGGAGCGTTTTGTATTTTGGGGGAGCAAAAAAATCTTCGAATGGGCA
GTAAAAACCCAGAAAAAACGCCATACAGCATTAGATGAAATGATTAATGCGCTGTTTTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(496-547)

AAA domain (AAA_30)

(125-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

62.522

97.237

0.608