Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KIM46_RS10045 Genome accession   NZ_CP074764
Coordinates   2018157..2018786 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain B1_2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2013157..2023786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM46_RS10025 (KIM46_09955) ycbZ 2013559..2015319 (-) 1761 WP_000156528.1 AAA family ATPase -
  KIM46_RS10030 (KIM46_09960) matP 2015505..2015957 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KIM46_RS10035 (KIM46_09965) ompA 2016032..2017072 (-) 1041 WP_000750416.1 porin OmpA -
  KIM46_RS10040 (KIM46_09970) sulA 2017429..2017938 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KIM46_RS10045 (KIM46_09975) sxy/tfoX 2018157..2018786 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KIM46_RS10050 (KIM46_09980) yccS 2018749..2020911 (-) 2163 WP_000875023.1 YccS family putative transporter -
  KIM46_RS10055 (KIM46_09985) yccF 2020921..2021367 (-) 447 WP_001261235.1 YccF domain-containing protein -
  KIM46_RS10060 (KIM46_09990) helD 2021490..2023544 (+) 2055 WP_419755841.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=492171 KIM46_RS10045 WP_000839153.1 2018157..2018786(+) (sxy/tfoX) [Escherichia coli strain B1_2]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=492171 KIM46_RS10045 WP_000839153.1 2018157..2018786(+) (sxy/tfoX) [Escherichia coli strain B1_2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1