Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   H4O27_RS02340 Genome accession   NZ_CP062976
Coordinates   451898..455125 (+) Length   1075 a.a.
NCBI ID   WP_165009827.1    Uniprot ID   -
Organism   Neisseria yangbaofengii strain ZJ785     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 446898..460125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4O27_RS02320 - 448983..449459 (-) 477 WP_226883489.1 IS630 family transposase -
  H4O27_RS02325 - 449497..449805 (-) 309 WP_165010422.1 IS630 transposase-related protein -
  H4O27_RS02330 - 449875..450165 (-) 291 WP_165009829.1 hypothetical protein -
  H4O27_RS02335 - 450200..451612 (-) 1413 WP_371865583.1 PepSY-associated TM helix domain-containing protein -
  H4O27_RS02340 recC 451898..455125 (+) 3228 WP_165009827.1 exodeoxyribonuclease V subunit gamma Machinery gene
  H4O27_RS02345 dusB 455248..456246 (+) 999 WP_165009825.1 tRNA dihydrouridine synthase DusB -
  H4O27_RS02350 - 456541..457164 (+) 624 WP_165009823.1 LysE family translocator -
  H4O27_RS02355 - 457207..457452 (+) 246 WP_095501972.1 Fis family transcriptional regulator -
  H4O27_RS02360 - 457520..457954 (-) 435 Protein_451 IS3 family transposase -
  H4O27_RS02365 - 458111..458953 (-) 843 WP_165009820.1 class II glutamine amidotransferase -

Sequence

Protein


Download         Length: 1075 a.a.        Molecular weight: 121553.64 Da        Isoelectric Point: 4.9823

>NTDB_id=492171 H4O27_RS02340 WP_165009827.1 451898..455125(+) (recC) [Neisseria yangbaofengii strain ZJ785]
MFHLYQSNRLESLAALFSRIQQLHPLKHALRAEEIVVQSQGMRRYLSSYLAKETGVAANLKFSLPAGLTWRLMRELIPDV
PALSPFSPEVMRWRLLALFRSEAFQTASEFETVRDKLQSYLCSGESADYHLAGQLADIFDQYLVYRPQWVDAWQAGKLLG
LGEDEIWQAQLWRFLDNGRQTAPHRVALWETLLANLSPQNLPERLFVFGISTMAPMYLQLFQAISEHCDVFVFALNPSEQ
HWGNVIEAAQILKSGDDVDLSQTGHPLLASLGKQGRDFFDFLSEIEMETPVYETEDSGEATLLHRLQNDIQTLSLPSENA
DGQGDALLSDGSVRVVSAHSPLRELQILKDQLLHILHEHPDWQPHDIAVLTPNIEPYSPFIEAVFGRAADGTQALPYSIS
DVKLSRRQPLFYALEQVLALLESRFEVDKVLPLLDSHLVQNRFEISEGDLPLLHDTIAELNVHWGLDEHMRGASDNLFTW
QQALSRLVLGWMLPAGGDGMWQNVSAWHGDVNRLAVFSRFSAFMQTLADTAQTWQTAATAEEWIERIRRLRNGLFALGDD
DQYAAQQFEQALVKWQEEVELSGFSDGLLPQHTVIRHISRFLSSESQAGFLRGGITFCSMVPMRSLPFKVLCLLGLNDGD
FPRNTKPAVFDLIAKHPKKGDRARRDDDRYLFLEAIISAREILYLSYVGRSIVNDAELAPSALLSEFTDTVAEMTGKRSK
DLLAGWVCHHPLQAFSTRYFRPQDSAKLISTRRDYAQALNEAAHRPSEKMTPFFNQPLGEEAEPPAIVTQNEFIGFWKNP
VKAWLRNALGWREPYRDEVWQSAEPFEPEQGEKIADAYLEARRRRQDFAAVETKLNAESLLPAGELGNLWQQRFQAAAKQ
LDQDLLESPKVPPVAYESAFDRQTLIGSLNHVYQCGQIVFRNKKLNAPERIALLLEHILFNAVRPSESESSLTYFVSNDE
TVVYPEIDRQTARDILQTWLGYYNIGQHRPLPFFAKTSLAAAEAYLKKQEWQAAQSAAAAAYFGSKMSTGQGSYTEVALV
FGHDEESPPDTPLFENLIIDMLVPLLAAVSPSKEA

Nucleotide


Download         Length: 3228 bp        

>NTDB_id=492171 H4O27_RS02340 WP_165009827.1 451898..455125(+) (recC) [Neisseria yangbaofengii strain ZJ785]
ATGTTTCATCTTTATCAATCCAACCGACTCGAATCGCTTGCCGCTTTGTTCAGCCGCATTCAGCAGCTTCACCCCTTAAA
ACACGCGCTGAGGGCGGAAGAAATTGTGGTGCAAAGCCAAGGCATGCGCCGTTATTTGAGCAGCTATTTGGCGAAAGAAA
CGGGTGTGGCGGCCAATCTGAAATTTAGCCTGCCTGCCGGTTTGACATGGCGTTTGATGCGCGAGCTGATTCCCGATGTG
CCCGCGCTCAGCCCGTTTTCGCCTGAAGTGATGCGCTGGCGGCTGTTGGCATTGTTCCGCAGCGAAGCGTTTCAGACGGC
CTCAGAATTTGAAACCGTGCGCGACAAGCTGCAAAGCTATTTATGCAGTGGAGAATCCGCAGATTACCATTTGGCCGGGC
AACTGGCGGATATTTTTGACCAATATTTGGTGTACCGTCCGCAATGGGTTGATGCGTGGCAGGCAGGCAAATTGTTGGGT
TTGGGCGAAGACGAAATCTGGCAGGCGCAATTGTGGCGTTTTCTTGACAACGGCAGGCAAACCGCGCCGCACCGCGTGGC
CTTGTGGGAAACCTTGCTGGCCAATTTGTCGCCGCAAAACCTGCCCGAACGCCTTTTCGTATTCGGCATTTCCACCATGG
CGCCGATGTATTTGCAGCTTTTTCAGGCCATTTCCGAGCATTGCGACGTGTTTGTGTTCGCACTCAATCCGAGCGAACAG
CATTGGGGCAATGTGATTGAAGCGGCACAGATTTTAAAAAGCGGCGACGATGTCGACTTGAGCCAAACCGGCCATCCGCT
GCTGGCTTCATTGGGCAAACAGGGGCGAGATTTCTTTGATTTTTTGTCAGAAATCGAAATGGAAACGCCGGTGTATGAAA
CCGAAGACAGCGGCGAGGCAACCTTGCTGCACCGTCTGCAAAACGATATTCAAACGCTGTCGCTGCCGTCTGAAAACGCC
GACGGGCAGGGCGATGCGCTGCTTTCGGACGGCTCTGTCCGCGTAGTGTCGGCACACAGTCCTTTGCGCGAGCTGCAAAT
TTTGAAAGACCAACTGCTGCACATTCTGCACGAACATCCCGACTGGCAGCCGCACGACATCGCCGTGCTGACCCCGAATA
TCGAACCCTACAGCCCGTTTATCGAAGCCGTGTTCGGCCGTGCGGCAGACGGTACGCAAGCCTTGCCGTATTCCATTTCC
GATGTGAAACTCAGCCGCCGCCAGCCGCTTTTTTACGCGCTGGAACAAGTATTGGCCTTACTGGAAAGCCGCTTTGAAGT
GGATAAAGTGCTGCCGCTGCTCGACAGCCATTTGGTGCAAAACCGCTTTGAAATCAGCGAAGGCGATTTGCCGCTGCTGC
ACGACACCATCGCCGAACTCAACGTGCATTGGGGCTTGGACGAACACATGCGCGGCGCGTCGGATAATTTGTTTACATGG
CAGCAGGCTTTGTCGCGCTTGGTGCTGGGTTGGATGCTGCCCGCCGGCGGCGACGGCATGTGGCAAAACGTCAGCGCGTG
GCACGGCGATGTCAACCGGTTGGCCGTGTTCAGCCGCTTCAGCGCCTTTATGCAGACCTTGGCCGACACCGCGCAAACAT
GGCAAACCGCCGCCACGGCAGAAGAATGGATTGAACGCATACGCCGATTGCGCAACGGCCTATTTGCCTTGGGCGACGAC
GACCAATACGCCGCGCAGCAATTCGAACAAGCTTTGGTGAAATGGCAGGAAGAAGTTGAATTGTCAGGATTTTCAGACGG
CCTGTTGCCGCAGCACACCGTTATCCGACACATCAGCCGCTTTTTGAGCAGCGAAAGCCAAGCAGGATTTTTGCGCGGCG
GCATTACCTTCTGCAGCATGGTGCCGATGCGCAGCCTGCCGTTTAAGGTGTTGTGTTTGTTGGGTCTGAACGACGGTGAT
TTCCCGCGCAACACCAAGCCGGCCGTGTTTGACCTGATTGCCAAACACCCGAAAAAAGGCGACCGCGCCCGCCGCGATGA
CGACCGCTATCTGTTTCTCGAAGCCATCATCAGCGCGCGCGAGATTCTGTATTTGTCGTATGTCGGCCGCAGCATTGTCA
ACGATGCCGAGCTGGCGCCGTCGGCCTTGTTGAGCGAATTCACCGACACTGTCGCCGAAATGACCGGAAAACGCAGCAAA
GATCTGCTGGCCGGCTGGGTGTGCCACCATCCGCTGCAGGCCTTTTCCACGCGCTATTTCCGGCCGCAAGATTCTGCCAA
GCTCATCAGTACGCGCCGTGATTACGCCCAAGCTCTGAATGAAGCGGCACACAGGCCGTCTGAAAAAATGACACCGTTTT
TCAACCAACCTTTGGGTGAAGAAGCCGAACCACCGGCCATCGTTACGCAAAACGAATTCATCGGTTTTTGGAAAAATCCC
GTCAAAGCATGGCTGCGCAATGCCTTGGGCTGGCGTGAACCGTATCGCGACGAAGTATGGCAATCGGCCGAGCCGTTCGA
GCCGGAACAGGGTGAAAAAATCGCCGATGCGTATTTGGAAGCGCGGCGCCGGCGGCAGGATTTTGCCGCCGTCGAAACCA
AGCTCAATGCCGAAAGCCTGTTGCCTGCCGGTGAATTGGGCAATTTGTGGCAGCAGCGTTTCCAAGCAGCCGCCAAGCAG
CTTGACCAAGATTTACTCGAAAGCCCGAAAGTGCCGCCGGTGGCTTACGAGTCGGCGTTCGACCGGCAAACCTTAATCGG
CAGCCTGAATCATGTGTATCAGTGCGGCCAAATTGTGTTCCGCAACAAAAAGCTCAACGCCCCCGAACGCATTGCCTTGC
TGCTGGAACATATTTTGTTCAATGCCGTGAGGCCGTCTGAAAGTGAAAGCAGCCTGACCTATTTTGTGTCGAATGACGAA
ACCGTGGTCTACCCCGAAATCGACCGCCAAACCGCCCGCGACATCCTGCAAACATGGCTTGGATACTACAATATCGGCCA
ACACCGCCCGTTGCCGTTTTTTGCGAAAACCAGCTTGGCCGCTGCCGAAGCCTATCTGAAAAAACAGGAATGGCAAGCCG
CACAATCCGCCGCCGCGGCTGCGTATTTCGGCAGTAAAATGAGCACGGGGCAGGGCAGCTACACCGAAGTGGCCTTGGTG
TTCGGGCATGATGAAGAATCGCCGCCGGATACGCCGTTGTTTGAAAATCTGATTATCGACATGTTGGTACCGTTGCTGGC
TGCGGTGTCGCCATCGAAAGAAGCGTAG

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-311)

RecC C-terminal domain (RecC_C)

(788-1004)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

66.321

98.605

0.654