Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IMZ31_RS18700 Genome accession   NZ_CP062974
Coordinates   3794031..3794516 (-) Length   161 a.a.
NCBI ID   WP_207528736.1    Uniprot ID   -
Organism   Pontibacillus sp. ALD_SL1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3789031..3799516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ31_RS18680 (IMZ31_18685) rplI 3790066..3790512 (-) 447 WP_036780509.1 50S ribosomal protein L9 -
  IMZ31_RS18685 (IMZ31_18690) - 3790509..3792482 (-) 1974 WP_207528733.1 DHH family phosphoesterase -
  IMZ31_RS18690 (IMZ31_18695) - 3792514..3793452 (-) 939 WP_207528734.1 YybS family protein -
  IMZ31_RS18695 (IMZ31_18700) rpsR 3793778..3794005 (-) 228 WP_207528735.1 30S ribosomal protein S18 -
  IMZ31_RS18700 (IMZ31_18705) ssbA 3794031..3794516 (-) 486 WP_207528736.1 single-stranded DNA-binding protein Machinery gene
  IMZ31_RS18705 (IMZ31_18710) rpsF 3794528..3794818 (-) 291 WP_036780517.1 30S ribosomal protein S6 -
  IMZ31_RS18710 (IMZ31_18715) ychF 3794947..3796047 (-) 1101 WP_207528737.1 redox-regulated ATPase YchF -
  IMZ31_RS18715 (IMZ31_18720) - 3796299..3796505 (-) 207 WP_207528738.1 DUF951 domain-containing protein -
  IMZ31_RS18720 (IMZ31_18725) - 3796518..3797339 (-) 822 WP_207530469.1 mechanosensitive ion channel family protein -
  IMZ31_RS18725 (IMZ31_18730) - 3797464..3798483 (-) 1020 WP_207528739.1 hypothetical protein -
  IMZ31_RS18730 (IMZ31_18735) yyaC 3798573..3799208 (+) 636 WP_207528740.1 spore protease YyaC -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17520.08 Da        Isoelectric Point: 4.5459

>NTDB_id=492162 IMZ31_RS18700 WP_207528736.1 3794031..3794516(-) (ssbA) [Pontibacillus sp. ALD_SL1]
MLNRVVLAGRLTKDPDLRYTPNGVAVANFTIAVNRPFTSQQGSRDADFINCVVWRRAAENLANFMSKGSLVGVDGRLQSR
SFDNQEGKRVFVTEVVADSVQFLESKGSSSGGAGSQGFQSNQNQSGYSPNNNNNNNNQPKQDDPFADNGEPIDISDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=492162 IMZ31_RS18700 WP_207528736.1 3794031..3794516(-) (ssbA) [Pontibacillus sp. ALD_SL1]
GTGTTAAATCGTGTCGTTCTTGCCGGCAGATTAACCAAGGATCCTGATTTGCGCTATACACCCAACGGAGTAGCCGTTGC
GAACTTTACGATTGCTGTAAACCGCCCGTTTACAAGCCAACAAGGTAGCCGTGATGCAGATTTCATTAACTGTGTCGTGT
GGCGTCGTGCCGCAGAGAACCTAGCGAACTTTATGAGTAAAGGAAGCTTAGTCGGTGTTGATGGACGTTTACAATCCCGA
AGCTTCGATAACCAAGAAGGCAAACGCGTCTTTGTAACAGAAGTTGTTGCTGATAGTGTACAATTCTTAGAATCAAAAGG
CTCGTCTTCAGGTGGCGCAGGTTCACAAGGATTCCAATCTAATCAGAACCAATCTGGATATAGTCCAAACAATAATAACA
ACAACAATAATCAACCTAAACAGGATGACCCATTCGCTGATAATGGGGAACCGATTGATATTTCAGATGACGATTTACCA
TTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.791

100

0.671
  ssb Latilactobacillus sakei subsp. sakei 23K

58.96

100

0.634
  ssb Glaesserella parasuis strain SC1401

36.517

100

0.404
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

65.839

0.385