Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   IMZ31_RS12440 Genome accession   NZ_CP062974
Coordinates   2449868..2451601 (-) Length   577 a.a.
NCBI ID   WP_207527674.1    Uniprot ID   -
Organism   Pontibacillus sp. ALD_SL1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2444868..2456601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ31_RS12425 (IMZ31_12430) - 2445417..2446772 (-) 1356 WP_207527671.1 aspartate kinase -
  IMZ31_RS12430 (IMZ31_12435) spo0A 2447196..2447981 (-) 786 WP_207527672.1 sporulation transcription factor Spo0A -
  IMZ31_RS12435 (IMZ31_12440) spoIVB 2448345..2449670 (-) 1326 WP_371825450.1 SpoIVB peptidase -
  IMZ31_RS12440 (IMZ31_12445) recN 2449868..2451601 (-) 1734 WP_207527674.1 DNA repair protein RecN Machinery gene
  IMZ31_RS12445 (IMZ31_12450) ahrC 2451631..2452080 (-) 450 WP_036782039.1 transcriptional regulator AhrC/ArgR -
  IMZ31_RS12450 (IMZ31_12455) - 2452214..2453026 (-) 813 WP_207527675.1 TlyA family RNA methyltransferase -
  IMZ31_RS12455 (IMZ31_12460) dxs 2453031..2454923 (-) 1893 WP_207527676.1 1-deoxy-D-xylulose-5-phosphate synthase -
  IMZ31_RS12460 (IMZ31_12465) - 2454943..2455539 (-) 597 WP_207527677.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 65066.21 Da        Isoelectric Point: 4.6210

>NTDB_id=492144 IMZ31_RS12440 WP_207527674.1 2449868..2451601(-) (recN) [Pontibacillus sp. ALD_SL1]
MLAELSIKDFAIIDEVSVQFREGLTVLTGETGAGKSIIIDAIQLLTGGRGSAEFVRYGTKKAEIEGLFYIDHDRHQAFRK
AEMFGVDIADDGMLVLNRTISANGKSICRVNGKLVTLAILREFGQTLIDIHTQHETQSLMDVDRHIELLDLFDRDQIGQA
KSDYLDLYKEFDALKKRYKELSENEQEMAQRLDLLEFQYNELDQANLKPGEDEELEEQRNKLMNHEKIYKGLHDGYNALY
GEQKAMDWLSLALSSLENARDYDDEIAKKAEELANHYYMVEELAHGVRNQLDGLEFSEEELDSIESRLNEINRLKKKYGQ
SVNDILEYAASVEEEIDQIKNKDTHVSKLEQSIQEKAEDVALEAKQLHEVRKEAAIELTKAIHDELKDLYLEKAAFGVDF
QSSEGSGQDPVVDGRSVKIGQNGYDLVKFMITTNPGEPLKDIHKVASGGELSRIMLALKRIFSKHQGVTSVIFDEVDTGV
SGRVAQSIAEKIHGISAASQVLCISHLPQVAAMADTHLYIRKEVENDRTTTVVEELDVTNKVEELSRMISGAEMTETTKD
HATELLDLADKFKKQHA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=492144 IMZ31_RS12440 WP_207527674.1 2449868..2451601(-) (recN) [Pontibacillus sp. ALD_SL1]
GTGTTAGCTGAATTATCCATTAAAGATTTTGCTATAATTGATGAAGTTTCCGTTCAATTTAGAGAAGGTTTAACCGTTCT
GACTGGAGAGACAGGCGCAGGGAAGTCCATCATTATTGATGCTATTCAGTTGCTTACTGGTGGGCGTGGATCTGCGGAAT
TTGTTCGTTATGGAACGAAGAAGGCGGAGATTGAAGGTCTGTTCTATATTGACCATGATCGCCATCAAGCTTTCCGGAAG
GCAGAAATGTTTGGTGTAGATATAGCAGACGATGGAATGCTCGTATTAAATCGAACCATAAGTGCCAACGGGAAAAGCAT
CTGTCGTGTGAACGGGAAGCTTGTGACGCTGGCTATTTTGCGTGAATTTGGCCAAACCCTAATTGATATACATACACAGC
ACGAGACGCAATCCCTGATGGATGTGGATCGTCATATAGAATTATTGGATTTATTCGATCGTGACCAAATAGGTCAAGCA
AAATCCGACTATTTAGACTTATATAAGGAATTCGACGCTTTAAAGAAACGGTATAAGGAACTAAGTGAGAACGAACAAGA
AATGGCGCAGCGTCTTGACCTGTTAGAATTTCAATATAATGAACTAGACCAGGCTAATTTAAAGCCGGGAGAAGACGAAG
AACTAGAAGAACAGCGTAATAAATTAATGAACCATGAAAAGATATATAAAGGACTTCATGATGGATACAATGCTCTATAT
GGAGAACAAAAAGCAATGGATTGGTTGTCTCTTGCTTTGTCTTCTCTTGAGAACGCCCGAGATTATGATGATGAAATCGC
GAAGAAGGCTGAAGAATTAGCGAATCATTATTACATGGTGGAAGAATTAGCACATGGAGTACGAAATCAGCTTGATGGTT
TGGAATTTAGTGAAGAAGAACTTGATTCAATTGAATCGAGGTTAAACGAAATTAACCGCCTTAAGAAAAAGTATGGACAA
AGTGTAAATGACATTTTAGAGTACGCTGCTTCAGTAGAAGAAGAAATTGATCAAATTAAAAATAAAGATACACACGTTTC
AAAATTGGAACAATCTATTCAAGAAAAGGCTGAAGACGTCGCTCTAGAAGCAAAACAACTTCATGAAGTACGTAAAGAAG
CGGCTATCGAGTTAACGAAAGCCATTCATGATGAGTTGAAAGATCTATACTTAGAAAAAGCTGCTTTTGGAGTAGATTTC
CAGAGCTCTGAAGGTTCAGGCCAAGACCCCGTCGTAGATGGCAGGTCAGTTAAAATTGGTCAAAATGGCTATGATCTTGT
CAAATTTATGATAACGACCAATCCGGGAGAACCATTAAAAGACATTCACAAAGTAGCAAGTGGCGGGGAGTTATCTCGTA
TTATGCTTGCTCTAAAGCGTATATTTTCGAAGCACCAGGGTGTTACTAGTGTGATTTTTGATGAGGTTGATACTGGAGTG
AGCGGTCGTGTAGCCCAGTCGATTGCTGAGAAGATACATGGCATTTCAGCGGCATCACAAGTGTTATGTATTTCTCATTT
GCCTCAAGTTGCAGCGATGGCGGACACGCACTTGTATATACGCAAAGAGGTTGAAAATGACCGGACAACAACTGTAGTTG
AAGAATTAGATGTAACGAATAAAGTAGAAGAACTGAGCCGCATGATTAGTGGAGCAGAAATGACAGAAACTACAAAAGAT
CATGCTACCGAGTTGCTTGATCTTGCTGACAAATTTAAAAAGCAACACGCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

55.13

99.653

0.549