Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IMZ31_RS00595 Genome accession   NZ_CP062974
Coordinates   115779..117161 (+) Length   460 a.a.
NCBI ID   WP_188655941.1    Uniprot ID   -
Organism   Pontibacillus sp. ALD_SL1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 110779..122161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ31_RS00575 (IMZ31_00575) - 110949..111413 (+) 465 WP_207528811.1 CtsR family transcriptional regulator -
  IMZ31_RS00580 (IMZ31_00580) - 111430..111984 (+) 555 WP_207528812.1 UvrB/UvrC motif-containing protein -
  IMZ31_RS00585 (IMZ31_00585) - 111984..113048 (+) 1065 WP_207528813.1 protein arginine kinase -
  IMZ31_RS00590 (IMZ31_00590) clpC 113070..115505 (+) 2436 WP_207528814.1 ATP-dependent protease ATP-binding subunit ClpC -
  IMZ31_RS00595 (IMZ31_00595) radA 115779..117161 (+) 1383 WP_188655941.1 DNA repair protein RadA Machinery gene
  IMZ31_RS00600 (IMZ31_00600) disA 117162..118235 (+) 1074 WP_207528815.1 DNA integrity scanning diadenylate cyclase DisA -
  IMZ31_RS00605 (IMZ31_00605) - 118398..119513 (+) 1116 WP_207528816.1 PIN/TRAM domain-containing protein -
  IMZ31_RS00610 (IMZ31_00610) - 119616..120809 (+) 1194 WP_207528817.1 bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 50241.69 Da        Isoelectric Point: 7.2617

>NTDB_id=492130 IMZ31_RS00595 WP_188655941.1 115779..117161(+) (radA) [Pontibacillus sp. ALD_SL1]
MAKQKSKFVCQECGYETAKWMGKCPSCHQWNTLVEERVASKSTGRHTFVTSDAQTSKKPEKITAIETKEEPRIKTGMPEV
NRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSSQLAHTKDVSVLYISGEESTRQTKLRADRLGVLSDDLYVLAETNMMDV
AHHIDQIQPSFVVIDSIQTIYKEEVNSAPGSVSQVRECTSELMRIAKNKGIPIFIVGHVTKEGSIAGPRLLEHMVDAVLY
FEGERHHTFRILRSVKNRFGSTHEMGIFEMKEEGLREVANPSEIFLEERSQGAAGSTVVASMEGTRPVLVEIQSLISPTS
YGNPRRMATGLDHNRVPLLMAVLEKRVGLLLQNQDAYVKVAGGVKLDEPAIDLAVAVSIASSFQDRPSKPDDVLVGEVGL
TGEIRRVARIEQRVQEAAKLGFKRAIVPKKNLSGWTLPDDIEIIGVNSVQEALKATLGGA

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=492130 IMZ31_RS00595 WP_188655941.1 115779..117161(+) (radA) [Pontibacillus sp. ALD_SL1]
TTGGCGAAACAAAAGTCAAAGTTTGTATGTCAGGAATGTGGGTATGAAACCGCTAAGTGGATGGGGAAATGTCCAAGTTG
CCATCAATGGAATACACTTGTTGAGGAACGAGTGGCATCGAAATCTACTGGAAGGCATACATTTGTAACAAGTGATGCAC
AAACTAGCAAGAAACCAGAAAAAATAACAGCAATCGAAACAAAAGAAGAGCCTCGAATAAAAACAGGTATGCCAGAAGTG
AATCGGGTGTTAGGTGGTGGCATTGTGCCAGGCTCCCTCGTCTTAATTGGCGGTGATCCTGGAATAGGGAAATCAACCTT
GTTGTTACAGGTGTCGTCTCAACTTGCCCATACAAAGGATGTAAGTGTACTTTATATATCAGGTGAGGAATCGACAAGAC
AAACGAAATTAAGAGCTGACCGTCTAGGTGTACTTTCTGATGATCTTTATGTTCTAGCTGAAACGAATATGATGGATGTT
GCTCATCATATTGATCAGATTCAACCTTCCTTCGTTGTTATTGATTCCATACAAACAATTTATAAAGAAGAAGTGAATTC
AGCGCCTGGCAGTGTTTCGCAAGTTCGTGAATGTACTAGTGAGCTAATGCGCATTGCTAAGAACAAAGGGATTCCAATCT
TTATCGTTGGACACGTCACGAAAGAAGGGTCAATTGCAGGTCCAAGGTTATTAGAACATATGGTTGATGCTGTACTTTAT
TTTGAAGGGGAGCGACACCATACATTCCGGATTCTTCGAAGCGTGAAGAACCGATTTGGAAGTACACATGAAATGGGTAT
TTTCGAGATGAAGGAAGAAGGGCTAAGGGAAGTAGCGAACCCTTCTGAAATATTCTTAGAAGAACGGTCTCAAGGAGCAG
CTGGGTCTACAGTTGTTGCTTCTATGGAGGGGACTCGCCCTGTATTGGTTGAGATTCAGTCACTCATATCTCCGACGAGT
TATGGAAATCCGAGAAGGATGGCTACAGGTTTAGATCATAATCGAGTGCCACTACTAATGGCTGTTTTAGAGAAGCGTGT
AGGCTTACTATTACAGAATCAAGATGCATATGTGAAAGTAGCAGGTGGAGTGAAACTTGATGAACCAGCTATTGACCTTG
CGGTGGCTGTAAGCATTGCCTCAAGCTTTCAAGATCGTCCATCTAAGCCTGATGATGTCTTGGTTGGAGAAGTAGGGCTG
ACAGGAGAGATTCGACGTGTTGCCCGTATTGAACAACGTGTACAAGAAGCGGCTAAGTTAGGGTTTAAACGCGCAATCGT
TCCAAAGAAAAATCTAAGCGGTTGGACTCTCCCTGACGACATCGAGATTATTGGAGTTAACTCAGTTCAAGAAGCTTTAA
AAGCTACGTTGGGAGGCGCTTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

73.638

99.783

0.735
  radA Streptococcus pneumoniae Rx1

62.555

98.696

0.617
  radA Streptococcus pneumoniae D39

62.555

98.696

0.617
  radA Streptococcus pneumoniae R6

62.555

98.696

0.617
  radA Streptococcus pneumoniae TIGR4

62.555

98.696

0.617
  radA Streptococcus mitis NCTC 12261

62.335

98.696

0.615
  radA Streptococcus mitis SK321

62.335

98.696

0.615