Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LPB04_RS20630 Genome accession   NZ_CP062941
Coordinates   4605668..4607047 (-) Length   459 a.a.
NCBI ID   WP_193686326.1    Uniprot ID   A0A7L9U2P2
Organism   Massilia litorea strain LPB0304     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4600668..4612047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB04_RS20605 (LPB04_20605) pstB 4600884..4601672 (-) 789 WP_227496511.1 phosphate ABC transporter ATP-binding protein PstB -
  LPB04_RS20610 (LPB04_20610) pstA 4601700..4602554 (-) 855 WP_193686323.1 phosphate ABC transporter permease PstA -
  LPB04_RS20615 (LPB04_20615) pstC 4602551..4603483 (-) 933 WP_227496775.1 phosphate ABC transporter permease subunit PstC -
  LPB04_RS20620 (LPB04_20620) pstS 4603648..4604685 (-) 1038 WP_193686324.1 phosphate ABC transporter substrate-binding protein PstS -
  LPB04_RS20625 (LPB04_20625) - 4605270..4605590 (-) 321 WP_193686325.1 PilZ domain-containing protein -
  LPB04_RS20630 (LPB04_20630) radA 4605668..4607047 (-) 1380 WP_193686326.1 DNA repair protein RadA Machinery gene
  LPB04_RS20635 (LPB04_20635) alr 4607040..4608146 (-) 1107 WP_193686327.1 alanine racemase -
  LPB04_RS20640 (LPB04_20640) lplT 4608285..4609547 (+) 1263 WP_193686328.1 lysophospholipid transporter LplT -
  LPB04_RS20645 (LPB04_20645) - 4609575..4610543 (-) 969 WP_193686329.1 DUF1853 family protein -
  LPB04_RS20650 (LPB04_20650) - 4610524..4611456 (-) 933 WP_193686330.1 uracil-DNA glycosylase family protein -
  LPB04_RS20655 (LPB04_20655) rimI 4611453..4611923 (-) 471 WP_227496512.1 ribosomal protein S18-alanine N-acetyltransferase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 48786.38 Da        Isoelectric Point: 7.6880

>NTDB_id=492051 LPB04_RS20630 WP_193686326.1 4605668..4607047(-) (radA) [Massilia litorea strain LPB0304]
MAKAKTQFVCSECGSVSSRWTGQCADCKAWNTMVEQTVETAGVNRMSQTVNHKALAQTAPVLSLADIEATDVPRFGTGIE
EFDRVLGGGLVAGGVVLIGGDPGIGKSTLLLQALANLAATRSTLYVSGEESGAQIALRARRLQVEAKDLKLQAEIQLEKI
LGTLADLKPEVAVIDSIQTLYSDALTAAPGSVSQVRECAAQLTRVAKQTGVTIILVGHVTKEGALAGPRVLEHIVDTVLY
FEGDTQSSFRLVRAIKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDNQVPGSCVMVTQEGTRPLLVEIQALVDASH
LPNARRLSVGLEQNRLAMLLAVLHRHAGIAAFDQDVFINAVGGVKIAEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGL
AGEIRPAPRGQERLKEAAKLGFSVAMIPKGNVPKQKIEGMNIIGVERIDQAFTKLRELD

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=492051 LPB04_RS20630 WP_193686326.1 4605668..4607047(-) (radA) [Massilia litorea strain LPB0304]
ATGGCTAAGGCAAAGACCCAGTTCGTCTGCAGCGAATGCGGCAGCGTTTCCAGCCGCTGGACCGGCCAGTGCGCCGACTG
CAAGGCCTGGAACACGATGGTCGAGCAGACCGTCGAGACGGCCGGCGTGAACCGCATGTCGCAGACCGTGAACCACAAGG
CGCTGGCGCAGACCGCGCCGGTGCTGTCCCTGGCCGACATCGAGGCCACCGACGTGCCGCGCTTCGGCACCGGCATCGAG
GAATTCGACCGCGTGCTGGGCGGCGGCCTGGTGGCGGGCGGCGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGTC
GACCCTGCTGCTGCAGGCCCTGGCGAATCTCGCCGCCACGCGCAGTACTTTATATGTGAGCGGCGAGGAATCCGGCGCCC
AGATCGCCCTGCGTGCGCGCCGCCTGCAGGTCGAGGCGAAGGACCTGAAGCTCCAGGCCGAGATCCAGCTGGAGAAGATC
CTCGGCACGCTGGCCGACCTGAAGCCCGAAGTGGCGGTGATCGACTCGATCCAGACCCTGTATTCGGATGCCCTCACCGC
GGCCCCGGGTTCGGTGTCGCAGGTGCGCGAATGCGCCGCGCAACTGACCCGCGTGGCGAAGCAGACCGGCGTCACCATCA
TCCTGGTCGGCCACGTGACGAAAGAGGGCGCGCTGGCCGGTCCGCGCGTGCTGGAGCACATCGTCGACACCGTGCTGTAT
TTCGAGGGCGATACCCAGTCCAGTTTCCGCCTGGTGCGCGCTATTAAAAACCGCTTCGGCGCCGTCAACGAACTGGGCGT
GTTCGCGATGACGGAAAAGGGGCTGAAAGGCGTGTCCAATCCCTCGGCCCTGTTCCTGTCGCAGCACGACAACCAGGTGC
CCGGTTCCTGCGTGATGGTGACCCAGGAGGGGACCCGGCCGCTGCTGGTCGAGATCCAGGCCCTGGTCGACGCCAGCCAC
CTGCCGAACGCGCGCAGGTTGTCCGTCGGCCTCGAGCAGAACCGCTTGGCGATGCTGCTGGCCGTGCTGCACCGTCACGC
CGGCATTGCCGCCTTCGACCAGGACGTCTTCATCAATGCCGTGGGCGGGGTGAAGATCGCCGAACCGGCAGCCGACCTCG
CGGTCCTGCTGGCGATCAACTCGTCGATGCGCAACAAGCCGCTGCCGCGCGGGCTGGTGGTGTTCGGCGAAGTGGGCCTG
GCGGGCGAGATCCGCCCCGCACCACGCGGCCAGGAGCGCCTGAAGGAAGCGGCCAAGCTGGGCTTTTCGGTGGCCATGAT
CCCGAAGGGGAATGTGCCGAAGCAGAAGATCGAGGGGATGAACATCATCGGGGTCGAGCGCATCGACCAGGCGTTCACCA
AGCTGCGCGAGCTCGACTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(362-452)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L9U2P2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.359

99.564

0.481
  radA Streptococcus mitis NCTC 12261

46.739

100

0.468
  radA Streptococcus mitis SK321

46.739

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.421

100

0.466
  radA Streptococcus pneumoniae D39

46.421

100

0.466
  radA Streptococcus pneumoniae Rx1

46.421

100

0.466
  radA Streptococcus pneumoniae R6

46.421

100

0.466