Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   LPB04_RS09070 Genome accession   NZ_CP062941
Coordinates   2027519..2027923 (+) Length   134 a.a.
NCBI ID   WP_193688360.1    Uniprot ID   A0A7L9UB17
Organism   Massilia litorea strain LPB0304     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2022519..2032923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB04_RS09040 (LPB04_09040) corA 2022573..2023547 (+) 975 WP_193688356.1 magnesium/cobalt transporter CorA -
  LPB04_RS09045 (LPB04_09045) - 2023558..2023932 (-) 375 WP_193688357.1 hypothetical protein -
  LPB04_RS09050 (LPB04_09050) - 2024012..2024812 (-) 801 WP_227496677.1 hypothetical protein -
  LPB04_RS09055 (LPB04_09055) hemL 2024896..2026194 (-) 1299 WP_193688358.1 glutamate-1-semialdehyde 2,1-aminomutase -
  LPB04_RS09060 (LPB04_09060) - 2026191..2026964 (-) 774 WP_407943887.1 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase -
  LPB04_RS09065 (LPB04_09065) - 2027125..2027277 (+) 153 WP_091876441.1 rubredoxin -
  LPB04_RS09070 (LPB04_09070) pilG 2027519..2027923 (+) 405 WP_193688360.1 PleD family two-component system response regulator Regulator
  LPB04_RS09075 (LPB04_09075) - 2027938..2028306 (+) 369 WP_307727401.1 response regulator transcription factor -
  LPB04_RS09080 (LPB04_09080) - 2028306..2028842 (+) 537 WP_193688361.1 chemotaxis protein CheW -
  LPB04_RS09085 (LPB04_09085) - 2028868..2031171 (+) 2304 WP_193688362.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14515.66 Da        Isoelectric Point: 7.9069

>NTDB_id=492044 LPB04_RS09070 WP_193688360.1 2027519..2027923(+) (pilG) [Massilia litorea strain LPB0304]
MTTSQQASSLTVMVVDDSNTIRRSAEIFLTQAGYRVVLAEDGFDALAKINDHHPALVFCDILMPRLDGYQTCALIKKSAR
FHATPVVMLSSKDGLFDRARGAMVGSSAYLTKPFSKDTLLAAVREHTAPQAGTP

Nucleotide


Download         Length: 405 bp        

>NTDB_id=492044 LPB04_RS09070 WP_193688360.1 2027519..2027923(+) (pilG) [Massilia litorea strain LPB0304]
ATGACGACATCGCAGCAAGCAAGCAGCCTCACCGTGATGGTGGTCGACGACAGCAACACGATCCGCCGTTCGGCCGAGAT
TTTCCTCACCCAGGCCGGCTACCGCGTGGTGCTGGCCGAGGACGGTTTCGATGCGCTCGCCAAGATCAACGACCACCATC
CGGCGCTCGTCTTCTGCGACATCCTGATGCCGCGCCTGGACGGTTACCAGACCTGTGCGCTGATCAAGAAGAGCGCGCGT
TTTCACGCGACGCCGGTGGTCATGCTCTCGTCGAAGGATGGCCTGTTCGACCGCGCGCGCGGCGCGATGGTCGGCTCGAG
CGCCTATCTCACCAAGCCGTTTTCCAAAGATACCCTGCTCGCGGCCGTCCGCGAGCACACGGCCCCACAGGCCGGAACCC
CTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(12-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L9UB17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

62.5

89.552

0.56