Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BE0216_RS06760 Genome accession   NZ_CP062938
Coordinates   1544195..1546021 (-) Length   608 a.a.
NCBI ID   WP_094635968.1    Uniprot ID   A0A7L9SS35
Organism   Bifidobacterium eulemuris strain DSM 100216     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1539195..1551021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE0216_RS06750 (BE0216_06750) - 1541206..1542594 (-) 1389 WP_226805819.1 MFS transporter -
  BE0216_RS06755 (BE0216_06755) - 1542672..1543697 (+) 1026 WP_094635969.1 FAD:protein FMN transferase -
  BE0216_RS06760 (BE0216_06760) rcrQ 1544195..1546021 (-) 1827 WP_094635968.1 ABC transporter ATP-binding protein Regulator
  BE0216_RS06765 (BE0216_06765) rcrP 1546093..1547925 (-) 1833 WP_094635906.1 ABC transporter ATP-binding protein Regulator
  BE0216_RS06770 (BE0216_06770) - 1548042..1548533 (-) 492 WP_094635905.1 MarR family winged helix-turn-helix transcriptional regulator -
  BE0216_RS06775 (BE0216_06775) - 1548689..1550206 (-) 1518 WP_094635904.1 amino acid permease -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 66353.64 Da        Isoelectric Point: 5.1188

>NTDB_id=492010 BE0216_RS06760 WP_094635968.1 1544195..1546021(-) (rcrQ) [Bifidobacterium eulemuris strain DSM 100216]
MGGVVEKPADFGGSMGKLIDFARKYIPAVIVALVLGMAGTVCQIIGPDKLKDVTNEIAKGLPAMVDGKPVLGAIDLDAVT
HIALILVALYVGYALLGYLQSLLMATVTQRVAQNLRTAISAKINKLPLKYFDKVSYGDVLSRITNDVDAIGQTLGQSLGS
LITSVTLFVGSLVMMFYNSWQLTLCAIGAALVGVVVMMVIMKASQKYFTRQQIALGDVNGHVEEMYAGHVVVKAYSGEAK
SIEQFEQYNADLYDSGWKSQFLSGLMMPLMNFVSNFGYVVVCVVGAALAMNGTITFGVIVAFMMYIRLFTQPLSQFAQAF
QNLQRTAAASERVFGFLDEPEMADESDLKPMLGYGRDTNGKPTRVRGDVEFSHVSFGYSPERTIIHDFSAEVKAGQKVAI
VGPTGAGKTTMVNLLMRFYEINGGTISIDGVDTKSVPRWNVHDQFSMVLQDTWVFHGTVRENIVYAKPDVTDQQVEDACR
AVGLHRFICSLPQGYDTVLDDKTALSAGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDQLTVGRTSFVIA
HRLSTIRDADMILVMRDGDIVERGTHEELLEADGFYAGLYNSQFALTD

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=492010 BE0216_RS06760 WP_094635968.1 1544195..1546021(-) (rcrQ) [Bifidobacterium eulemuris strain DSM 100216]
ATGGGCGGCGTCGTCGAAAAGCCGGCCGACTTCGGCGGCTCGATGGGCAAGCTCATCGATTTCGCACGCAAATACATTCC
GGCCGTCATCGTCGCGCTGGTGCTCGGCATGGCCGGCACCGTCTGCCAGATCATCGGTCCCGACAAACTCAAGGACGTCA
CCAACGAAATCGCCAAAGGCCTGCCCGCCATGGTCGACGGCAAGCCCGTGCTCGGCGCGATCGACCTCGACGCGGTCACG
CATATCGCGCTGATCCTCGTGGCGCTGTATGTCGGCTACGCGCTGCTGGGCTACCTGCAGAGCCTGCTCATGGCCACCGT
CACCCAACGGGTGGCGCAGAACCTGCGCACGGCCATCAGCGCGAAAATCAACAAACTGCCGCTCAAATACTTCGACAAAG
TCAGCTACGGCGACGTGCTCTCCCGCATCACCAACGATGTGGACGCCATCGGCCAGACCCTCGGCCAAAGTTTGGGCAGC
CTGATCACCTCGGTCACGCTGTTCGTCGGCTCGCTCGTCATGATGTTCTACAACAGCTGGCAGCTCACCCTATGCGCCAT
CGGCGCCGCCCTGGTCGGCGTCGTCGTGATGATGGTGATTATGAAGGCCTCGCAGAAGTACTTCACCCGCCAGCAGATCG
CGCTGGGCGACGTGAACGGCCATGTCGAGGAGATGTACGCCGGCCATGTGGTCGTCAAGGCCTATTCCGGCGAGGCGAAG
TCGATCGAGCAGTTCGAACAGTACAACGCCGACCTGTACGACTCCGGCTGGAAGTCGCAGTTCCTCTCCGGCCTGATGAT
GCCGCTGATGAACTTCGTCTCCAACTTCGGCTATGTGGTGGTGTGCGTGGTGGGCGCGGCGCTCGCCATGAACGGCACCA
TCACCTTCGGCGTGATCGTGGCGTTCATGATGTACATCCGCCTGTTCACCCAGCCGCTCAGCCAGTTCGCGCAGGCCTTC
CAGAACCTGCAGCGCACGGCCGCCGCCTCCGAGCGCGTGTTCGGATTCCTCGACGAGCCCGAGATGGCCGACGAGTCCGA
CCTCAAGCCGATGCTCGGCTACGGCCGTGACACGAACGGCAAGCCGACGCGCGTGCGCGGCGACGTGGAGTTCAGTCACG
TGAGCTTCGGCTACTCGCCCGAGCGCACCATCATCCACGACTTCTCCGCCGAGGTGAAGGCCGGGCAGAAGGTCGCCATC
GTCGGTCCCACCGGCGCGGGCAAAACCACCATGGTGAACCTGCTGATGCGTTTCTACGAGATCAACGGCGGCACCATCTC
CATCGACGGCGTGGATACCAAGTCCGTGCCGCGCTGGAACGTGCACGACCAGTTCTCGATGGTGCTGCAGGACACGTGGG
TGTTCCACGGCACCGTGCGCGAGAACATCGTCTATGCCAAGCCGGACGTCACCGACCAGCAGGTCGAGGACGCCTGCCGC
GCCGTGGGTCTGCACCGTTTCATCTGCTCGCTGCCGCAGGGTTATGACACCGTGCTCGACGACAAAACCGCGCTTTCCGC
GGGACAGAAGCAGCTGCTCACCATCGCCCGAGCCATGGTGCAGGACGCGCCGATCCTCATCCTCGACGAGGCGACCAGCT
CGGTGGATACGCGCACCGAGGAGCTGATCCAAAAGGCGATGGACCAGCTGACGGTGGGTCGCACGAGCTTCGTGATCGCG
CACCGCCTGTCCACCATCCGCGACGCCGACATGATCCTCGTGATGCGCGACGGCGACATCGTCGAGCGCGGCACGCATGA
GGAACTGCTCGAAGCGGACGGCTTCTACGCCGGACTGTACAACTCGCAGTTCGCCCTCACTGACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(30-313)

ABC transporter (ABC_tran)

(386-533)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L9SS35

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.446

94.408

0.533