Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   IMO23_RS16585 Genome accession   NZ_CP062919
Coordinates   3420983..3421510 (-) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain Res13-Abat-PEA21-P4-01-A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3415983..3426510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMO23_RS16565 (IMO23_16565) - 3416172..3417047 (-) 876 WP_000218807.1 hypothetical protein -
  IMO23_RS16570 (IMO23_16570) aroB 3417063..3418145 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  IMO23_RS16575 (IMO23_16575) aroK 3418174..3418743 (-) 570 WP_000643712.1 shikimate kinase AroK -
  IMO23_RS16580 (IMO23_16580) pilQ 3418755..3420920 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  IMO23_RS16585 (IMO23_16585) pilP 3420983..3421510 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  IMO23_RS16590 (IMO23_16590) pilO 3421521..3422261 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  IMO23_RS16595 (IMO23_16595) pilN 3422258..3422899 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  IMO23_RS16600 (IMO23_16600) pilM 3422899..3423957 (-) 1059 WP_195707637.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=491988 IMO23_RS16585 WP_000695065.1 3420983..3421510(-) (pilP) [Acinetobacter baumannii strain Res13-Abat-PEA21-P4-01-A]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=491988 IMO23_RS16585 WP_000695065.1 3420983..3421510(-) (pilP) [Acinetobacter baumannii strain Res13-Abat-PEA21-P4-01-A]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTAATCCAAACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCGGATGGTCGAGAAGGC
TATGTCGAAAGACCGAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714