Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   IMO23_RS01235 Genome accession   NZ_CP062919
Coordinates   254389..254715 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain Res13-Abat-PEA21-P4-01-A     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 249389..259715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMO23_RS01210 (IMO23_01210) hemC 250006..250923 (+) 918 WP_002159654.1 hydroxymethylbilane synthase -
  IMO23_RS01215 (IMO23_01215) - 250928..251695 (+) 768 WP_000897410.1 uroporphyrinogen-III synthase -
  IMO23_RS01220 (IMO23_01220) - 251704..252543 (+) 840 WP_109429064.1 hypothetical protein -
  IMO23_RS01225 (IMO23_01225) - 252553..253746 (+) 1194 WP_000681775.1 membrane protein -
  IMO23_RS01230 (IMO23_01230) - 253754..254194 (+) 441 WP_000661569.1 thioesterase family protein -
  IMO23_RS01235 (IMO23_01235) hns 254389..254715 (+) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  IMO23_RS01240 (IMO23_01240) gspN 255047..255790 (+) 744 WP_032035825.1 type II secretion system protein N -
  IMO23_RS01245 (IMO23_01245) - 255790..256626 (+) 837 WP_109429065.1 type II secretion system protein N -
  IMO23_RS01250 (IMO23_01250) gspD 256668..258938 (+) 2271 WP_001196442.1 type II secretion system secretin GspD -
  IMO23_RS01255 (IMO23_01255) - 258979..259608 (+) 630 WP_031966137.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=491957 IMO23_RS01235 WP_000801427.1 254389..254715(+) (hns) [Acinetobacter baumannii strain Res13-Abat-PEA21-P4-01-A]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=491957 IMO23_RS01235 WP_000801427.1 254389..254715(+) (hns) [Acinetobacter baumannii strain Res13-Abat-PEA21-P4-01-A]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1