Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   IS509_RS07795 Genome accession   NZ_CP074698
Coordinates   1628494..1629129 (+) Length   211 a.a.
NCBI ID   WP_279458674.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain X4-136     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1623494..1634129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS509_RS07770 - 1624334..1625347 (+) 1014 WP_001096106.1 phosphotransferase -
  IS509_RS07775 murU 1625347..1626036 (+) 690 WP_000646452.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  IS509_RS07780 rsmG 1626124..1626756 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  IS509_RS07785 - 1626778..1627560 (+) 783 WP_000057212.1 ParA family protein -
  IS509_RS07790 - 1627557..1628444 (+) 888 WP_000023433.1 ParB/RepB/Spo0J family partition protein -
  IS509_RS07795 exbB 1628494..1629129 (+) 636 WP_279458674.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IS509_RS07800 - 1629145..1629573 (+) 429 WP_000669684.1 biopolymer transporter ExbD -
  IS509_RS07805 msbA 1629570..1631297 (+) 1728 WP_001070734.1 lipid A export permease/ATP-binding protein MsbA -
  IS509_RS07810 lpxK 1631300..1632310 (+) 1011 WP_000050464.1 tetraacyldisaccharide 4'-kinase -
  IS509_RS07815 kdsB 1632320..1633081 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IS509_RS07820 - 1633093..1634073 (+) 981 WP_001075411.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23197.16 Da        Isoelectric Point: 7.3567

>NTDB_id=491931 IS509_RS07795 WP_279458674.1 1628494..1629129(+) (exbB) [Acinetobacter baumannii strain X4-136]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLKKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=491931 IS509_RS07795 WP_279458674.1 1628494..1629129(+) (exbB) [Acinetobacter baumannii strain X4-136]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAAAAAAAAATATTAA
CTTCTTAGGGACTTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

42.932

90.521

0.389