Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG/cglG   Type   Machinery gene
Locus tag   INV104_RS10285 Genome accession   NC_017591
Coordinates   1934571..1934963 (-) Length   130 a.a.
NCBI ID   WP_001818966.1    Uniprot ID   -
Organism   Streptococcus pneumoniae INV104     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1929571..1939963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INV104_RS14020 - 1929797..1929928 (-) 132 WP_000768904.1 hypothetical protein -
  INV104_RS10260 (INV104_17610) - 1929929..1931119 (-) 1191 WP_000167769.1 acetate kinase -
  INV104_RS10265 (INV104_17620) comYH 1931170..1932123 (-) 954 WP_000345118.1 class I SAM-dependent methyltransferase Machinery gene
  INV104_RS12495 - 1932469..1933270 (+) 802 WP_128887635.1 IS5 family transposase -
  INV104_RS10280 - 1933421..1933897 (+) 477 WP_000777686.1 GNAT family N-acetyltransferase -
  INV104_RS10285 (INV104_17630) comGG/cglG 1934571..1934963 (-) 393 WP_001818966.1 competence type IV pilus minor pilin ComGG Machinery gene
  INV104_RS10290 (INV104_17640) comGF/cglF 1934941..1935402 (-) 462 WP_000250537.1 competence type IV pilus minor pilin ComGF Machinery gene
  INV104_RS10295 (INV104_17650) comGE/cglE 1935365..1935667 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  INV104_RS10300 (INV104_17660) comGD/cglD 1935630..1936034 (-) 405 WP_000588017.1 competence type IV pilus minor pilin ComGD Machinery gene
  INV104_RS10305 (INV104_17670) comGC/cglC 1936027..1936353 (-) 327 WP_000738625.1 competence type IV pilus major pilin ComGC Machinery gene
  INV104_RS10310 (INV104_17680) comGB/cglB 1936355..1937371 (-) 1017 WP_001844019.1 competence type IV pilus assembly protein ComGB Machinery gene
  INV104_RS10315 (INV104_17690) comGA/cglA/cilD 1937319..1938260 (-) 942 WP_000249574.1 competence type IV pilus ATPase ComGA Machinery gene
  INV104_RS10320 (INV104_17700) - 1938336..1938701 (-) 366 WP_000286415.1 DUF1033 family protein -
  INV104_RS10325 (INV104_17710) - 1938852..1939910 (-) 1059 WP_000649471.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 15031.39 Da        Isoelectric Point: 10.2365

>NTDB_id=49192 INV104_RS10285 WP_001818966.1 1934571..1934963(-) (comGG/cglG) [Streptococcus pneumoniae INV104]
MWKKKKVKAGVLLYAVTIAAIFSLLLQFYLTRQIAHYQDYALNKEKLVAFAMAKRTKDKAEQESGEQVFNLGQVSYQNKK
TSLVTTVRTDKSQYEFLFPSVKIKEEKTDKKEEVATDSSEKAEKKIRREA

Nucleotide


Download         Length: 393 bp        

>NTDB_id=49192 INV104_RS10285 WP_001818966.1 1934571..1934963(-) (comGG/cglG) [Streptococcus pneumoniae INV104]
GTGTGGAAAAAGAAGAAAGTTAAGGCAGGTGTTCTCCTCTACGCAGTCACCATAGCAGCCATCTTTAGTCTTTTGTTGCA
ATTTTATTTGACCCGACAAATCGCCCACTATCAAGACTATGCTTTAAATAAAGAAAAATTGGTTGCTTTTGCCATGGCTA
AACGAACCAAGGATAAAGCCGAGCAAGAAAGTGGGGAACAGGTTTTTAATCTAGGTCAGGTGAGCTATCAAAACAAGAAA
ACAAGCTTGGTGACGACTGTTCGTACGGATAAGAGTCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AACGGATAAAAAGGAAGAGGTAGCGACTGATTCAAGCGAAAAAGCGGAGAAAAAAATCAGAAGAGAAGCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae Rx1

94.017

90

0.846
  comGG/cglG Streptococcus pneumoniae D39

94.017

90

0.846
  comGG/cglG Streptococcus pneumoniae R6

94.017

90

0.846
  comGG/cglG Streptococcus pneumoniae TIGR4

94.017

90

0.846
  comGG/cglG Streptococcus mitis NCTC 12261

89.344

93.846

0.838
  comGG/cglG Streptococcus mitis SK321

86.066

93.846

0.808

Multiple sequence alignment