Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   IS508_RS08785 Genome accession   NZ_CP074695
Coordinates   1815615..1816250 (-) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain X4-107     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1810615..1821250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS508_RS08760 - 1810671..1811651 (-) 981 WP_001075411.1 DNA polymerase III subunit delta' -
  IS508_RS08765 kdsB 1811663..1812424 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IS508_RS08770 lpxK 1812434..1813444 (-) 1011 WP_000050464.1 tetraacyldisaccharide 4'-kinase -
  IS508_RS08775 msbA 1813447..1815174 (-) 1728 WP_001070734.1 lipid A export permease/ATP-binding protein MsbA -
  IS508_RS08780 - 1815171..1815599 (-) 429 WP_000669684.1 biopolymer transporter ExbD -
  IS508_RS08785 exbB 1815615..1816250 (-) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IS508_RS08790 - 1816300..1817187 (-) 888 WP_000023433.1 ParB/RepB/Spo0J family partition protein -
  IS508_RS08795 - 1817184..1817966 (-) 783 WP_000057212.1 ParA family protein -
  IS508_RS08800 rsmG 1817988..1818620 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  IS508_RS08805 murU 1818708..1819397 (-) 690 WP_000646452.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  IS508_RS08810 - 1819397..1820410 (-) 1014 WP_001096106.1 phosphotransferase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=491849 IS508_RS08785 WP_000264037.1 1815615..1816250(-) (exbB) [Acinetobacter baumannii strain X4-107]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=491849 IS508_RS08785 WP_000264037.1 1815615..1816250(-) (exbB) [Acinetobacter baumannii strain X4-107]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACTTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393