Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KIM92_RS08990 Genome accession   NZ_CP074680
Coordinates   1861947..1863374 (-) Length   475 a.a.
NCBI ID   WP_000980539.1    Uniprot ID   -
Organism   Escherichia coli strain MEI008     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1856947..1868374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM92_RS08960 (KIM92_08950) yeeZ 1857002..1857826 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  KIM92_RS08965 (KIM92_08955) yeeY 1857872..1858801 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  KIM92_RS08970 (KIM92_08960) yoeI 1859016..1859078 (+) 63 WP_010723108.1 membrane protein YoeI -
  KIM92_RS08975 (KIM92_08965) plaP 1859068..1860426 (+) 1359 WP_059334211.1 putrescine/proton symporter PlaP -
  KIM92_RS08980 (KIM92_08970) tsuA 1860605..1861663 (+) 1059 WP_000492333.1 thiosulfate utilization transporter TsuA/YeeE -
  KIM92_RS08985 (KIM92_08975) tsuB 1861677..1861904 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KIM92_RS08990 (KIM92_08980) sbcB 1861947..1863374 (-) 1428 WP_000980539.1 exodeoxyribonuclease I Machinery gene
  KIM92_RS08995 (KIM92_08985) dacD 1863583..1864749 (+) 1167 WP_000830144.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KIM92_RS09000 (KIM92_08990) sbmC 1864868..1865341 (+) 474 WP_059334213.1 DNA gyrase inhibitor SbmC -
  KIM92_RS09005 (KIM92_08995) yeeA 1865539..1866597 (+) 1059 WP_001200890.1 FUSC family protein -
  KIM92_RS09010 (KIM92_09000) tmaR 1866769..1867098 (+) 330 WP_000450409.1 DUF496 family protein -
  KIM92_RS09015 (KIM92_09005) - 1867199..1867381 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  KIM92_RS09020 (KIM92_09010) - 1867444..1867581 (+) 138 Protein_1769 transposase domain-containing protein -
  KIM92_RS09025 (KIM92_09015) - 1867870..1867962 (-) 93 Protein_1770 DUF957 domain-containing protein -
  KIM92_RS09030 (KIM92_09020) yeeW 1867996..1868190 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54498.80 Da        Isoelectric Point: 5.3498

>NTDB_id=491776 KIM92_RS08990 WP_000980539.1 1861947..1863374(-) (sbcB) [Escherichia coli strain MEI008]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=491776 KIM92_RS08990 WP_000980539.1 1861947..1863374(-) (sbcB) [Escherichia coli strain MEI008]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGAGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCTCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTACATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581