Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KIM92_RS01940 Genome accession   NZ_CP074680
Coordinates   419688..420155 (-) Length   155 a.a.
NCBI ID   WP_000340171.1    Uniprot ID   -
Organism   Escherichia coli strain MEI008     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 414688..425155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM92_RS01915 (KIM92_01915) rpsG 414829..415299 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  KIM92_RS01920 (KIM92_01920) fusA 415396..417510 (+) 2115 WP_000124700.1 elongation factor G -
  KIM92_RS01925 (KIM92_01925) tuf 417581..418765 (+) 1185 WP_000031783.1 elongation factor Tu -
  KIM92_RS01930 (KIM92_01930) bfd 418948..419142 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  KIM92_RS01935 (KIM92_01935) bfr 419215..419691 (+) 477 WP_000675515.1 bacterioferritin -
  KIM92_RS01940 (KIM92_01940) pilD 419688..420155 (-) 468 WP_000340171.1 A24 family peptidase Machinery gene
  KIM92_RS01945 (KIM92_01945) rpsJ 420534..420845 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  KIM92_RS01950 (KIM92_01950) rplC 420878..421507 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  KIM92_RS01955 (KIM92_01955) rplD 421518..422123 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  KIM92_RS01960 (KIM92_01960) rplW 422120..422422 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  KIM92_RS01965 (KIM92_01965) rplB 422440..423261 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  KIM92_RS01970 (KIM92_01970) rpsS 423278..423556 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  KIM92_RS01975 (KIM92_01975) rplV 423571..423903 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  KIM92_RS01980 (KIM92_01980) rpsC 423921..424622 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  KIM92_RS01985 (KIM92_01985) rplP 424635..425045 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16938.08 Da        Isoelectric Point: 8.1296

>NTDB_id=491752 KIM92_RS01940 WP_000340171.1 419688..420155(-) (pilD) [Escherichia coli strain MEI008]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=491752 KIM92_RS01940 WP_000340171.1 419688..420155(-) (pilD) [Escherichia coli strain MEI008]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361
  pilD Neisseria gonorrhoeae MS11

38.095

94.839

0.361