Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   INV104_RS09310 Genome accession   NC_017591
Coordinates   1772168..1772878 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A062WVH4
Organism   Streptococcus pneumoniae INV104     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1767168..1777878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INV104_RS09295 (INV104_16190) - 1767823..1768071 (-) 249 WP_000364990.1 YneF family protein -
  INV104_RS09300 (INV104_16200) treC 1768213..1769838 (-) 1626 WP_000171233.1 alpha,alpha-phosphotrehalase -
  INV104_RS09305 (INV104_16210) treP 1770016..1771983 (-) 1968 WP_000514349.1 PTS system trehalose-specific EIIBC component -
  INV104_RS09310 (INV104_16220) treR 1772168..1772878 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  INV104_RS09315 (INV104_16230) - 1772911..1773714 (-) 804 WP_000157659.1 ABC transporter ATP-binding protein -
  INV104_RS13835 (INV104_16240) - 1773727..1774604 (-) 878 Protein_1799 ABC transporter permease -
  INV104_RS09325 (INV104_16250) - 1774649..1775425 (-) 777 Protein_1800 ABC transporter substrate-binding protein -
  INV104_RS09330 (INV104_16260) - 1775979..1776932 (-) 954 WP_001155321.1 IS30-like element ISSpn8 family transposase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=49175 INV104_RS09310 WP_000760673.1 1772168..1772878(+) (treR) [Streptococcus pneumoniae INV104]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=49175 INV104_RS09310 WP_000760673.1 1772168..1772878(+) (treR) [Streptococcus pneumoniae INV104]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTCATCCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGGCGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WVH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593

Multiple sequence alignment