Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   KIH05_RS15505 Genome accession   NZ_CP074585
Coordinates   3214860..3216248 (+) Length   462 a.a.
NCBI ID   WP_000048862.1    Uniprot ID   A0ABX6CKW7
Organism   Acinetobacter baumannii strain ATCC 19606     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3209860..3221248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIH05_RS15485 (KIH05_15435) dapF 3210475..3211320 (-) 846 WP_000923484.1 diaminopimelate epimerase -
  KIH05_RS15490 (KIH05_15440) lysA 3211326..3212576 (-) 1251 WP_000011146.1 diaminopimelate decarboxylase -
  KIH05_RS15495 (KIH05_15445) lptM 3212599..3212823 (-) 225 WP_001255198.1 LPS translocon maturation chaperone LptM -
  KIH05_RS15500 (KIH05_15450) - 3212964..3214370 (-) 1407 WP_000070815.1 amino acid permease -
  KIH05_RS15505 (KIH05_15455) radA/sms 3214860..3216248 (+) 1389 WP_000048862.1 DNA repair protein RadA Machinery gene
  KIH05_RS15510 (KIH05_15460) - 3216331..3217308 (+) 978 WP_000451848.1 Tim44 domain-containing protein -
  KIH05_RS15515 (KIH05_15465) epmA 3217367..3218341 (-) 975 WP_000059546.1 EF-P lysine aminoacylase EpmA -
  KIH05_RS15520 (KIH05_15470) - 3218338..3219405 (-) 1068 WP_000706084.1 4-phosphoerythronate dehydrogenase -
  KIH05_RS15525 (KIH05_15475) - 3219510..3219902 (-) 393 WP_000119198.1 YkvA family protein -
  KIH05_RS15530 (KIH05_15480) fdhD 3220022..3220813 (-) 792 WP_000187626.1 formate dehydrogenase accessory sulfurtransferase FdhD -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49718.15 Da        Isoelectric Point: 7.4015

>NTDB_id=491718 KIH05_RS15505 WP_000048862.1 3214860..3216248(+) (radA/sms) [Acinetobacter baumannii strain ATCC 19606]
MSKVKTVYRCEQCGADHLKWAGQCSECGEWNCLNEVKLESTTAHRARPKVGGYAGQVANITTLNKVSVSHETRLPTGISE
FDRVLGGGLVTGSVVLIGGDPGIGKSTILLQTATHMASAKSSALYITGEESLSQVALRAQRLDLPTDQLKVMAETCVERI
CEVLEQERPVVAILDSIQTLYTETLQSAPGGVSQIRESAALLTRYAKNSGTALFIVGHVTKEGALAGPRVLEHMVDCVLY
FEGQSDSRYRMIRAVKNRFGAVNELGVFGMTDKGLREVANPSAIFLSRYDEAIPGSIVMISREGTRPLLVEVQALVDDAQ
GQPRRVALGLEQNRLNMLLAVMHRHGGVQTTGQDVYVNIVGGLKITETGSDLAVLLACASSLRTKALPQQLAVFGEVGLS
GEIRPVPNGQERLKEAAKHGFKYVILPRGNAPQKAIPGVQVIAVARLHEALTEAMQLSDELT

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=491718 KIH05_RS15505 WP_000048862.1 3214860..3216248(+) (radA/sms) [Acinetobacter baumannii strain ATCC 19606]
ATGAGCAAAGTCAAAACCGTTTACCGTTGCGAGCAATGTGGTGCCGATCATCTAAAATGGGCAGGTCAATGTTCAGAGTG
TGGTGAATGGAATTGTCTTAATGAAGTCAAACTAGAATCCACCACTGCTCATCGTGCACGTCCTAAAGTTGGGGGTTATG
CGGGTCAAGTCGCCAATATTACAACGCTTAATAAAGTCTCTGTTTCTCATGAAACCCGTTTACCAACAGGTATTAGCGAA
TTTGACCGTGTGCTTGGTGGTGGCTTGGTGACAGGTTCTGTAGTACTCATTGGTGGTGACCCGGGTATTGGTAAATCGAC
CATTCTTTTACAAACAGCAACTCACATGGCAAGTGCAAAAAGTTCTGCACTTTATATTACGGGTGAGGAATCGCTGTCAC
AGGTTGCCTTACGCGCCCAACGCCTTGACCTGCCAACAGACCAGCTAAAAGTCATGGCTGAAACTTGTGTCGAACGCATT
TGTGAAGTTTTAGAACAAGAACGTCCTGTTGTCGCAATCTTGGACTCTATCCAAACGCTTTACACAGAAACGCTTCAATC
TGCGCCGGGTGGGGTTTCACAAATTCGTGAATCTGCTGCGTTATTAACCCGTTATGCAAAAAATAGTGGCACAGCGCTAT
TTATTGTTGGTCACGTGACCAAAGAAGGTGCATTGGCAGGTCCTCGTGTTTTAGAACACATGGTGGACTGCGTACTTTAC
TTTGAAGGCCAATCAGACTCACGTTATCGAATGATTCGTGCAGTGAAAAACCGTTTTGGTGCAGTCAATGAGCTTGGCGT
ATTTGGCATGACCGATAAAGGCTTACGTGAAGTGGCTAACCCTTCTGCTATCTTTTTAAGTCGTTATGACGAAGCCATTC
CCGGTTCAATTGTCATGATTAGCCGTGAAGGAACTCGCCCACTTTTAGTTGAAGTTCAGGCTTTAGTCGATGATGCTCAA
GGACAACCAAGACGTGTTGCACTTGGTCTTGAACAAAACCGTTTAAACATGCTGCTTGCTGTTATGCATCGTCATGGGGG
TGTACAAACCACCGGACAAGATGTGTATGTCAATATTGTAGGTGGTTTAAAAATTACCGAAACAGGTTCGGACTTGGCTG
TTTTACTTGCATGTGCTTCGAGTTTGCGAACAAAAGCCTTACCTCAGCAGCTTGCAGTTTTTGGTGAAGTTGGGCTTTCA
GGTGAAATCCGCCCTGTACCTAATGGTCAGGAACGTTTAAAAGAAGCAGCAAAACATGGGTTTAAATACGTCATTTTACC
AAGAGGTAATGCCCCGCAAAAAGCAATTCCGGGCGTACAAGTGATTGCTGTTGCCCGCCTGCATGAAGCCTTGACTGAGG
CGATGCAACTTAGTGATGAATTGACATAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

KaiC (ATPase)

(75-150)

Subunit ChlI of Mg-chelatase (ChlI)

(346-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.171

98.918

0.457
  radA Streptococcus mitis NCTC 12261

43.043

99.567

0.429
  radA Streptococcus pneumoniae D39

42.67

98.918

0.422
  radA Streptococcus pneumoniae TIGR4

42.67

98.918

0.422
  radA Streptococcus mitis SK321

42.67

98.918

0.422
  radA Streptococcus pneumoniae R6

42.67

98.918

0.422
  radA Streptococcus pneumoniae Rx1

42.67

98.918

0.422