Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   CA347_RS06185 Genome accession   NC_021554
Coordinates   1276875..1278026 (+) Length   383 a.a.
NCBI ID   WP_000020365.1    Uniprot ID   -
Organism   Staphylococcus aureus CA-347     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1271875..1283026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA347_RS06160 (CA347_1197) yfmH 1272704..1273990 (+) 1287 WP_000664766.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  CA347_RS06165 (CA347_1198) ymfI 1273990..1274694 (+) 705 WP_000646222.1 elongation factor P 5-aminopentanone reductase -
  CA347_RS06170 (CA347_1199) - 1274799..1275626 (+) 828 WP_000214890.1 YmfK family protein -
  CA347_RS06175 (CA347_1200) - 1275645..1276037 (+) 393 WP_000859445.1 helix-turn-helix domain-containing protein -
  CA347_RS06180 (CA347_1201) pgsA 1276071..1276649 (+) 579 WP_001025090.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CA347_RS06185 (CA347_1202) cinA 1276875..1278026 (+) 1152 WP_000020365.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  CA347_RS06190 (CA347_1203) recA 1278191..1279234 (+) 1044 WP_016528711.1 recombinase RecA -
  CA347_RS06195 (CA347_1204) rny 1279588..1281147 (+) 1560 WP_001050913.1 ribonuclease Y -
  CA347_RS06200 (CA347_1205) - 1281445..1281660 (-) 216 WP_000026308.1 hypothetical protein -
  CA347_RS06205 (CA347_1206) - 1281834..1282631 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43189.55 Da        Isoelectric Point: 6.4455

>NTDB_id=49171 CA347_RS06185 WP_000020365.1 1276875..1278026(+) (cinA) [Staphylococcus aureus CA-347]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQVMTPNNKQQALVIEGSTVLANHHGMAPGMIVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETVLIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LYRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNLEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=49171 CA347_RS06185 WP_000020365.1 1276875..1278026(+) (cinA) [Staphylococcus aureus CA-347]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGTAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAGCAAATCATCATGGCATGG
CTCCAGGAATGATAGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTA
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACATTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAGTATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCAGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAGCAAGAAATT
CTTTATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTATTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
AGAATTTAAAACTGAACAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTCATAA
GATTATTAAATTGGCTTAGAACTACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.389

100

0.433


Multiple sequence alignment