Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KHZ70_RS07025 Genome accession   NZ_CP074576
Coordinates   1498426..1499853 (-) Length   475 a.a.
NCBI ID   WP_193115386.1    Uniprot ID   -
Organism   Escherichia coli strain CS18F     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1493426..1504853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHZ70_RS06995 (KHZ70_07000) yeeZ 1493481..1494305 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  KHZ70_RS07000 (KHZ70_07005) yeeY 1494351..1495280 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  KHZ70_RS07005 (KHZ70_07010) yoeI 1495495..1495557 (+) 63 WP_010723108.1 membrane protein YoeI -
  KHZ70_RS07010 (KHZ70_07015) plaP 1495547..1496905 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KHZ70_RS07015 (KHZ70_07020) tsuA 1497084..1498142 (+) 1059 WP_193115387.1 thiosulfate utilization transporter TsuA/YeeE -
  KHZ70_RS07020 (KHZ70_07025) tsuB 1498156..1498383 (+) 228 WP_000985278.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KHZ70_RS07025 (KHZ70_07030) sbcB 1498426..1499853 (-) 1428 WP_193115386.1 exodeoxyribonuclease I Machinery gene
  KHZ70_RS07030 (KHZ70_07035) dacD 1500062..1501228 (+) 1167 WP_193115385.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KHZ70_RS07035 (KHZ70_07040) sbmC 1501347..1501820 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  KHZ70_RS07040 (KHZ70_07045) yeeA 1502019..1503077 (+) 1059 WP_001200891.1 FUSC family protein -
  KHZ70_RS07045 (KHZ70_07050) tmaR 1503249..1503578 (+) 330 WP_000450409.1 DUF496 family protein -
  KHZ70_RS07050 (KHZ70_07055) - 1503679..1503861 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  KHZ70_RS07055 (KHZ70_07060) - 1503915..1504061 (+) 147 Protein_1381 transposase domain-containing protein -
  KHZ70_RS07060 (KHZ70_07065) - 1504350..1504430 (-) 81 Protein_1382 hypothetical protein -
  KHZ70_RS07065 (KHZ70_07070) - 1504476..1504601 (-) 126 Protein_1383 hypothetical protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54486.79 Da        Isoelectric Point: 5.4720

>NTDB_id=491608 KHZ70_RS07025 WP_193115386.1 1498426..1499853(-) (sbcB) [Escherichia coli strain CS18F]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEGEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=491608 KHZ70_RS07025 WP_193115386.1 1498426..1499853(-) (sbcB) [Escherichia coli strain CS18F]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGGCGAACCGTTCACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTACCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGCTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583