Detailed information NTG0491595

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KHZ70_RS03410
• Genome accession: NZ_CP074576
• Coordinates: 730709..731701 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CS18F
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 725709..736701

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KHZ70_RS03380 (KHZ70_03380)	ispD	725770..726480 (+)	711	WP_000246133.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KHZ70_RS03385 (KHZ70_03385)	ispF	726480..726959 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KHZ70_RS03390 (KHZ70_03390)	truD	726956..728005 (+)	1050	WP_000568955.1	tRNA pseudouridine(13) synthase TruD	-
KHZ70_RS03395 (KHZ70_03395)	surE	727986..728747 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KHZ70_RS03400 (KHZ70_03400)	pcm	728741..729367 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
KHZ70_RS03405 (KHZ70_03405)	nlpD	729552..730646 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
KHZ70_RS03410 (KHZ70_03410)	rpoS	730709..731701 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KHZ70_RS03415 (KHZ70_03415)	-	731822..732229 (-)	408	WP_001208064.1	MarR family transcriptional regulator	-
KHZ70_RS03420 (KHZ70_03420)	-	732376..732969 (+)	594	WP_000767730.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
KHZ70_RS03425 (KHZ70_03425)	-	732969..734396 (+)	1428	WP_000863185.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
KHZ70_RS03430 (KHZ70_03430)	-	734407..734643 (+)	237	WP_000562976.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
KHZ70_RS03435 (KHZ70_03435)	ygbN	734681..736045 (-)	1365	WP_000104432.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=491595 KHZ70_RS03410 WP_000081550.1 730709..731701(+) (rpoS) [Escherichia coli strain CS18F]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=491595 KHZ70_RS03410 WP_000081550.1 730709..731701(+) (rpoS) [Escherichia coli strain CS18F]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715