Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   KIH94_RS08075 Genome accession   NZ_CP074571
Coordinates   1537063..1538085 (+) Length   340 a.a.
NCBI ID   WP_015483198.1    Uniprot ID   -
Organism   Bacillus subtilis strain BYS2     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1532063..1543085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIH94_RS08040 (KIH94_08040) ylbE 1532363..1532602 (+) 240 WP_003232231.1 YlbE-like family protein -
  KIH94_RS08045 (KIH94_08045) ylbF 1532718..1533167 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  KIH94_RS08050 (KIH94_08050) ylbG 1533222..1533494 (+) 273 WP_009967171.1 YlbG family protein -
  KIH94_RS08055 (KIH94_08055) rsmD 1533817..1534371 (+) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  KIH94_RS08060 (KIH94_08060) coaD 1534376..1534861 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  KIH94_RS08065 (KIH94_08065) spoVV 1534872..1536098 (-) 1227 WP_015383588.1 dipicolinic acid transporter SpoVV -
  KIH94_RS08070 (KIH94_08070) ylbK 1536279..1537061 (+) 783 WP_015383589.1 patatin family protein -
  KIH94_RS08075 (KIH94_08075) sepM 1537063..1538085 (+) 1023 WP_015483198.1 protease DdcP Regulator
  KIH94_RS20815 (KIH94_08080) - 1538276..1538725 (-) 450 WP_015483199.1 hypothetical protein -
  KIH94_RS08085 (KIH94_08085) - 1538798..1540030 (-) 1233 WP_015383591.1 nucleotidyltransferase -
  KIH94_RS08090 (KIH94_08090) - 1540027..1540212 (-) 186 WP_003232215.1 hypothetical protein -
  KIH94_RS08095 (KIH94_08095) ylbN 1540240..1540758 (+) 519 WP_014479718.1 DUF177 domain-containing protein -
  KIH94_RS08100 (KIH94_08100) rpmF 1540780..1540959 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  KIH94_RS08105 (KIH94_08105) gerR 1541105..1541686 (+) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  KIH94_RS08110 (KIH94_08110) ylbP 1541743..1542225 (-) 483 WP_014476736.1 N-acetyltransferase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37551.11 Da        Isoelectric Point: 5.9932

>NTDB_id=491498 KIH94_RS08075 WP_015483198.1 1537063..1538085(+) (sepM) [Bacillus subtilis strain BYS2]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSDMKI
VPVDTMQDAIDYLNKLKAKS

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=491498 KIH94_RS08075 WP_015483198.1 1537063..1538085(+) (sepM) [Bacillus subtilis strain BYS2]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGTATTAAGGAGGAAGGCGAGTCAGATAAGGAATATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCACTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACGATTGATGTTGA
CGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAGATATGAAGATT
GTTCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGTTAA

Domains

Predicted by InterProScan.

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.403