Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   KIH94_RS06700 Genome accession   NZ_CP074571
Coordinates   1284737..1285873 (+) Length   378 a.a.
NCBI ID   WP_080030661.1    Uniprot ID   -
Organism   Bacillus subtilis strain BYS2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1279737..1290873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIH94_RS06680 (KIH94_06680) uxaA 1280187..1281680 (+) 1494 WP_015383416.1 altronate dehydratase family protein -
  KIH94_RS06685 (KIH94_06685) yjnA 1281719..1282483 (-) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -
  KIH94_RS06690 (KIH94_06690) bstD 1282708..1283172 (-) 465 WP_015383417.1 DinB family protein -
  KIH94_RS06695 (KIH94_06695) yjoB 1283321..1284592 (+) 1272 WP_015383418.1 ATPase YjoB -
  KIH94_RS06700 (KIH94_06700) rapC 1284737..1285873 (+) 1137 WP_080030661.1 response regulator aspartate phosphatase RapA Regulator
  KIH94_RS06705 (KIH94_06705) phrA 1285863..1285997 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  KIH94_RS06710 (KIH94_06710) yjpA 1286027..1286284 (-) 258 WP_003232731.1 YciI family protein -
  KIH94_RS06715 (KIH94_06715) xlyB 1286404..1287357 (+) 954 WP_015483118.1 N-acetylmuramoyl-L-alanine amidase -
  KIH94_RS06720 (KIH94_06720) yjqA 1287397..1287774 (-) 378 WP_015483119.1 PH domain-containing protein -
  KIH94_RS06725 (KIH94_06725) pghB 1287879..1288481 (+) 603 WP_015383421.1 poly-gamma-glutamate hydrolase family protein -
  KIH94_RS06730 (KIH94_06730) xpdC 1288558..1289394 (+) 837 WP_003245071.1 manganese catalase family protein -
  KIH94_RS06735 (KIH94_06735) xkdA 1289438..1290034 (-) 597 WP_015483120.1 ImmA/IrrE family metallo-endopeptidase -
  KIH94_RS06740 (KIH94_06740) xre 1290196..1290537 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45032.20 Da        Isoelectric Point: 4.7189

>NTDB_id=491487 KIH94_RS06700 WP_080030661.1 1284737..1285873(+) (rapC) [Bacillus subtilis strain BYS2]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLDYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=491487 KIH94_RS06700 WP_080030661.1 1284737..1285873(+) (rapC) [Bacillus subtilis strain BYS2]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACTGGGCTTCTCGATTATTACTTTAACTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCTCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCCGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATAGACACAGAATCAGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

45.213

99.471

0.45
  rapF Bacillus subtilis subsp. subtilis str. 168

41.425

100

0.415