Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   F7R26_RS10505 Genome accession   NZ_CP062803
Coordinates   2335472..2336833 (-) Length   453 a.a.
NCBI ID   WP_150983537.1    Uniprot ID   A0A643G4P7
Organism   Cupriavidus basilensis strain DSM 11853     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2330472..2341833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7R26_RS10485 (F7R26_010480) - 2331559..2333505 (+) 1947 WP_150983529.1 ATP-binding cassette domain-containing protein -
  F7R26_RS10490 (F7R26_010485) - 2333579..2334064 (-) 486 WP_150983531.1 disulfide bond formation protein B -
  F7R26_RS10495 (F7R26_010490) - 2334124..2334777 (-) 654 WP_150983533.1 GNAT family N-acetyltransferase -
  F7R26_RS10500 (F7R26_010495) - 2334803..2335384 (-) 582 WP_150983535.1 hypothetical protein -
  F7R26_RS10505 (F7R26_010500) radA 2335472..2336833 (-) 1362 WP_150983537.1 DNA repair protein RadA Machinery gene
  F7R26_RS10510 (F7R26_010505) alr 2336940..2338055 (-) 1116 WP_150983539.1 alanine racemase -
  F7R26_RS10515 (F7R26_010510) lplT 2338507..2339826 (+) 1320 WP_150983541.1 lysophospholipid transporter LplT -
  F7R26_RS10520 (F7R26_010515) - 2339851..2341017 (-) 1167 WP_150983542.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48503.83 Da        Isoelectric Point: 7.2045

>NTDB_id=491479 F7R26_RS10505 WP_150983537.1 2335472..2336833(-) (radA) [Cupriavidus basilensis strain DSM 11853]
MAKPKNVYTCTECGGTSPRWQGQCPQCQQWNTLVESVAETPSTKRFQPLAASAVVQRLSEIDAADVPRFSSGIEEFDRVL
GGGLVSGGVVLIGGDPGIGKSTLLLQALANLSAQRRVLYVSGEESGAQIALRAQRLGVDSPHLALLAEIQLEKIQATLEV
EKPEVAVIDSIQTLFSDALTSAPGSVAQVRECAAQLTRIAKSTGTTIILVGHVTKDGSLAGPRVLEHIVDTVLYFEGDTH
SSHRLIRAFKNRFGAVNELGVFAMTERGLRGVSNPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEVQALVDTANVPNPRR
LAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKPLPRGLVVFGEIGLAGEIRP
SPRGQDRLREAAKLGFSIAVIPKANAPKQKIEGLEVIAVERLEQAIDRVRHME

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=491479 F7R26_RS10505 WP_150983537.1 2335472..2336833(-) (radA) [Cupriavidus basilensis strain DSM 11853]
TTGGCCAAGCCCAAGAACGTCTATACCTGCACAGAGTGCGGCGGCACCTCGCCGCGCTGGCAAGGCCAGTGCCCGCAGTG
CCAGCAATGGAACACGCTGGTGGAGAGCGTGGCGGAAACCCCTTCGACCAAGCGCTTCCAGCCGCTGGCGGCCTCGGCCG
TGGTGCAGCGCCTGTCCGAGATCGACGCCGCCGACGTGCCGCGCTTTTCCAGCGGCATCGAGGAGTTCGACCGCGTGCTC
GGCGGTGGCCTGGTGTCGGGTGGGGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCCACCTTGCTGCTGCAAGC
CCTGGCCAACCTGTCCGCGCAGCGCCGCGTGCTGTACGTCAGCGGCGAGGAGTCCGGCGCGCAGATCGCACTGCGCGCGC
AGCGCCTGGGCGTGGACAGCCCGCACCTGGCGCTGCTGGCCGAGATCCAGCTCGAGAAGATCCAGGCCACGCTGGAGGTG
GAAAAGCCCGAGGTCGCGGTGATCGATTCGATCCAGACCTTGTTCTCGGATGCGCTGACCTCGGCCCCAGGCTCGGTCGC
CCAGGTGCGCGAGTGCGCGGCCCAGCTGACCCGGATTGCCAAGAGCACCGGCACCACCATCATCCTGGTCGGCCACGTGA
CCAAGGACGGCAGCCTGGCCGGCCCGCGCGTGCTGGAGCACATCGTCGATACCGTGCTGTATTTCGAGGGCGACACGCAT
TCCTCGCACCGCCTGATCCGTGCTTTCAAGAACCGTTTTGGCGCGGTCAACGAGCTGGGCGTATTCGCCATGACCGAGCG
CGGCCTGCGCGGGGTCAGCAACCCGTCAGCACTGTTCCTGTCGCAGCATGAGCAAGTGGTGCCCGGCTCCTGCGTGCTGG
TGACGCAGGAGGGTACGCGGCCGCTGCTGGTGGAGGTGCAGGCGCTGGTCGACACGGCTAACGTGCCGAACCCGCGGCGC
CTGGCGGTGGGTCTGGAGCAGAACCGGCTGGCCATGCTGCTGGCGGTGCTGCACCGCCATGCCGGCATTGCCTGCTTTGA
CCAGGATGTCTTCCTCAACGCCGTGGGCGGGGTCAAGATCACCGAGCCGGCGGCCGACCTGGCGGTGCTGCTGGCCATTC
ACTCCTCCATGCGCAACAAGCCGCTGCCGCGCGGCCTGGTGGTGTTTGGTGAAATCGGACTGGCCGGTGAGATCCGGCCC
AGCCCGCGCGGGCAGGACCGCTTGCGCGAGGCGGCCAAGCTGGGCTTCTCGATCGCGGTGATCCCCAAGGCCAATGCGCC
CAAGCAGAAGATCGAGGGCCTGGAAGTGATCGCGGTTGAGCGGCTGGAGCAGGCGATCGACCGGGTTCGGCATATGGAGT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(60-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A643G4P7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.894

99.779

0.488
  radA Streptococcus mitis SK321

46.696

100

0.468
  radA Streptococcus pneumoniae D39

46.593

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.593

100

0.468
  radA Streptococcus pneumoniae R6

46.593

100

0.468
  radA Streptococcus pneumoniae Rx1

46.593

100

0.468
  radA Streptococcus mitis NCTC 12261

46.374

100

0.466