Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   F7R26_RS06390 Genome accession   NZ_CP062803
Coordinates   1411018..1413456 (+) Length   812 a.a.
NCBI ID   WP_150983850.1    Uniprot ID   A0A643G2B9
Organism   Cupriavidus basilensis strain DSM 11853     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1406018..1418456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7R26_RS06370 (F7R26_006365) - 1406757..1407881 (-) 1125 WP_150983846.1 hypothetical protein -
  F7R26_RS06375 (F7R26_006370) - 1408042..1409292 (+) 1251 WP_150983847.1 lipoprotein-releasing ABC transporter permease subunit -
  F7R26_RS06380 (F7R26_006375) lolD 1409285..1410034 (+) 750 WP_150983848.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  F7R26_RS06385 (F7R26_006380) - 1410063..1410944 (+) 882 WP_150983849.1 TatD family hydrolase -
  F7R26_RS06390 (F7R26_006385) comA 1411018..1413456 (+) 2439 WP_150983850.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  F7R26_RS06395 (F7R26_006390) - 1413368..1414306 (-) 939 WP_150983851.1 MurR/RpiR family transcriptional regulator -
  F7R26_RS06400 (F7R26_006395) edd 1414633..1416519 (+) 1887 WP_150983852.1 phosphogluconate dehydratase -
  F7R26_RS06405 (F7R26_006400) - 1416708..1417217 (+) 510 WP_150983954.1 gluconokinase -

Sequence

Protein


Download         Length: 812 a.a.        Molecular weight: 87146.18 Da        Isoelectric Point: 10.9891

>NTDB_id=491475 F7R26_RS06390 WP_150983850.1 1411018..1413456(+) (comA) [Cupriavidus basilensis strain DSM 11853]
MRLFLLAFVAGCWWLQQQGSLPRGGAVWVLVAAGLLTAALALCLRTRRPGWARVAWIVLSLLAGFGYSAWRAEARLAERL
APGLEGADLQVSGVVAGLPAQAARGLRFVFALDDAAGMPPRVLLGWEDAPAGLRPGERYVFTVRLRQPHGLANPHGFDYE
FWLMAAGLGATGYVRDAIGEPQDAVGERLAWRIARWRAQVRDHVLQSLPPDARFAPVLAALVVGDQHGIQSRDWTLFTRT
GIGHLISISGLHITMISGLFSSFVYWLWRHSFGLGRWLSRPLPLWWPARRAALVGAVIAALVYGLLAGMQVPALRTVSML
VVAALALWSGRTPPGSLVLAWAAFVAIGLDPWAVLSPGFWLSFGAVGVIFLAASQPANQSAPTRWQRVRASLAQAARTQW
SVTVGLVPLTLLLFQQVSVISPLANAAAIPLISLLVTPMALLAAAVPAPLAGWLLGPAHLLLHWLVLGLEWLSAPPWAVW
QAARAGPVALALAVLGSLLLLAPVPCGLRARLHGAVLLLPMVLAGRQPVAHGEFRATAIDIGQGTAVLVETRSRVLLYDA
GPAYGWGAARGESGNSAGARDIVPFLRGAGVRRLDTLVISHEDADHAGGARDIMAALPVDSLLSGAPAGHRLLVPPASAA
YLEARPCEAGQQWEWDGVRFAVLHPLPGIAQNAAIDSNARSCVLKVAGSARSLLLTGDIGRRDEAALLARLSTQDLRADF
LQVPHHGSNTSSSGAFLAVVAPEVALFQVGYRNRHRHPRPEIWDRYGSHEIARYRSDETGAVQLTTRGESYALQAYRQHA
RRYWRAAPPAPR

Nucleotide


Download         Length: 2439 bp        

>NTDB_id=491475 F7R26_RS06390 WP_150983850.1 1411018..1413456(+) (comA) [Cupriavidus basilensis strain DSM 11853]
ATGCGTCTGTTTTTGCTCGCCTTCGTGGCGGGCTGCTGGTGGCTGCAGCAGCAAGGCTCGCTGCCGCGTGGCGGCGCGGT
GTGGGTGTTGGTGGCTGCCGGGCTGCTGACGGCCGCGCTCGCGCTGTGCCTGCGCACGCGCCGGCCTGGATGGGCGCGGG
TGGCCTGGATCGTGTTGTCGCTGCTGGCTGGTTTCGGCTATTCGGCGTGGCGCGCCGAGGCTCGTCTGGCAGAGCGGCTG
GCGCCTGGGCTGGAAGGGGCCGACCTGCAGGTGAGTGGCGTGGTGGCTGGGCTGCCGGCGCAGGCCGCGCGCGGCCTGCG
CTTTGTGTTCGCGCTTGACGATGCGGCGGGCATGCCGCCCCGCGTCTTGCTGGGCTGGGAGGATGCCCCGGCCGGCTTGC
GGCCGGGCGAGCGCTACGTCTTCACCGTGCGCTTGCGGCAGCCCCATGGCCTGGCCAACCCGCATGGCTTCGATTACGAA
TTCTGGCTGATGGCGGCCGGGCTTGGCGCCACTGGCTACGTGCGCGATGCCATCGGCGAGCCGCAGGACGCTGTCGGCGA
ACGGCTCGCGTGGCGGATCGCGCGATGGCGGGCGCAGGTGCGTGATCATGTCTTGCAAAGCCTGCCACCCGATGCCCGCT
TCGCCCCGGTGCTGGCGGCCCTGGTGGTGGGCGATCAGCACGGCATCCAGTCGCGCGACTGGACCTTGTTCACGCGCACC
GGCATCGGCCACCTGATCAGCATTTCCGGCCTGCATATCACCATGATTTCCGGCCTGTTCTCCAGCTTCGTCTATTGGCT
GTGGCGGCATTCGTTCGGGCTCGGGCGATGGCTGTCGCGGCCTTTGCCGCTGTGGTGGCCGGCGCGGCGCGCGGCGCTGG
TGGGCGCGGTGATCGCGGCCCTCGTCTACGGCCTGCTGGCGGGCATGCAGGTGCCGGCGCTGCGCACCGTGTCGATGCTG
GTGGTGGCGGCGCTGGCACTCTGGAGCGGGCGCACGCCGCCGGGCTCGCTGGTGCTGGCCTGGGCGGCGTTCGTGGCGAT
CGGGCTCGACCCCTGGGCGGTGCTGTCGCCCGGGTTCTGGCTTTCGTTCGGCGCGGTGGGCGTGATCTTCCTGGCCGCGT
CGCAACCGGCCAACCAGTCCGCGCCGACGCGTTGGCAGCGTGTTCGCGCCAGCCTTGCGCAGGCGGCGCGCACGCAGTGG
TCCGTCACGGTCGGGCTGGTGCCGCTGACCTTGCTGCTGTTCCAGCAGGTCTCGGTGATTTCGCCGCTGGCCAATGCCGC
GGCGATCCCGCTGATCAGCCTGCTGGTGACGCCCATGGCCTTGCTGGCGGCGGCTGTGCCCGCGCCGCTGGCGGGCTGGC
TGCTTGGCCCCGCGCATCTGCTGCTGCACTGGCTGGTGCTGGGCCTGGAGTGGCTGTCGGCGCCGCCGTGGGCGGTGTGG
CAGGCCGCGCGCGCCGGGCCGGTAGCGCTGGCGCTGGCGGTGCTCGGCTCGCTGCTGTTGCTGGCCCCCGTGCCCTGTGG
CTTGCGCGCGCGCCTGCATGGCGCGGTACTGCTGTTGCCGATGGTGCTGGCGGGGCGGCAGCCAGTGGCGCACGGGGAGT
TTCGCGCCACCGCGATCGATATCGGGCAGGGCACCGCGGTACTGGTGGAAACGCGTTCGCGTGTGCTGCTCTACGATGCC
GGGCCGGCTTACGGCTGGGGCGCCGCGCGTGGCGAATCGGGCAACAGCGCCGGCGCGCGGGACATCGTGCCGTTCCTGCG
CGGCGCTGGCGTGCGCAGGCTGGACACGCTGGTGATCAGCCATGAAGACGCGGACCACGCTGGCGGTGCGCGCGACATCA
TGGCGGCACTGCCGGTGGACAGCCTGCTATCGGGCGCGCCGGCGGGACATCGGCTGCTGGTGCCGCCGGCGAGCGCTGCG
TACCTGGAGGCGCGGCCCTGCGAGGCGGGGCAGCAGTGGGAGTGGGATGGCGTGCGCTTTGCCGTGCTGCATCCCTTGCC
GGGCATCGCGCAGAATGCCGCCATCGACAGCAATGCGCGCAGTTGCGTGCTCAAGGTGGCGGGCAGCGCGCGCAGCCTGC
TGCTGACCGGCGATATCGGCCGGCGCGACGAGGCGGCGCTGCTGGCACGCCTGTCCACGCAAGACTTGCGCGCGGACTTC
CTGCAGGTGCCGCATCACGGCAGCAACACCTCATCAAGCGGGGCGTTCCTGGCCGTGGTGGCGCCGGAGGTCGCGCTGTT
CCAGGTGGGCTACCGCAACCGCCACCGGCATCCCCGGCCCGAGATCTGGGACCGCTACGGCTCGCACGAGATCGCCCGCT
ATCGCAGCGACGAGACCGGCGCGGTCCAGCTTACGACGCGCGGCGAGTCTTACGCGCTGCAGGCTTACCGCCAGCACGCG
CGGCGCTACTGGCGCGCGGCGCCGCCTGCGCCTCGCTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(542-621)

Domain of unknown function (DUF4131) (DUF4131)

(27-177)

Competence protein (Competence)

(221-501)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A643G2B9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

48.41

100

0.506