Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   KIH94_RS00340 Genome accession   NZ_CP074571
Coordinates   60578..60808 (+) Length   76 a.a.
NCBI ID   WP_015482693.1    Uniprot ID   -
Organism   Bacillus subtilis strain BYS2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55578..65808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIH94_RS00310 (KIH94_00310) ridA 55741..56118 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  KIH94_RS00315 (KIH94_00315) spoVG 56313..56606 (+) 294 WP_003218346.1 septation regulator SpoVG -
  KIH94_RS00320 (KIH94_00320) glmU 56799..58169 (+) 1371 WP_015382564.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  KIH94_RS00325 (KIH94_00325) prsS 58192..59145 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  KIH94_RS00330 (KIH94_00330) rplYB 59231..59845 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  KIH94_RS00335 (KIH94_00335) pth 59952..60518 (+) 567 WP_015382565.1 aminoacyl-tRNA hydrolase -
  KIH94_RS00340 (KIH94_00340) subA/fin 60578..60808 (+) 231 WP_015482693.1 anti-sigma-F factor Fin Machinery gene
  KIH94_RS00345 (KIH94_00345) mfd 60878..64411 (+) 3534 WP_014478601.1 transcription-repair coupling factor -
  KIH94_RS00350 (KIH94_00350) spoVT 64547..65083 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8798.74 Da        Isoelectric Point: 5.3895

>NTDB_id=491440 KIH94_RS00340 WP_015482693.1 60578..60808(+) (subA/fin) [Bacillus subtilis strain BYS2]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHENHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=491440 KIH94_RS00340 WP_015482693.1 60578..60808(+) (subA/fin) [Bacillus subtilis strain BYS2]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAAAATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

98.684

100

0.987