Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   J5O00_RS26330 Genome accession   NZ_CP074415
Coordinates   2809067..2809309 (-) Length   80 a.a.
NCBI ID   WP_257575543.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 64     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2804067..2814309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5O00_RS13405 - 2804582..2805034 (+) 453 WP_020835434.1 beta-galactosidase subunit beta -
  J5O00_RS13410 - 2805113..2806595 (+) 1483 Protein_2621 amino acid permease -
  J5O00_RS13415 - 2806644..2807588 (-) 945 WP_025622497.1 LysR family transcriptional regulator -
  J5O00_RS13420 chrA 2807677..2808816 (+) 1140 WP_029803963.1 chromate efflux transporter -
  J5O00_RS26330 qstR 2809067..2809309 (-) 243 WP_257575543.1 LuxR C-terminal-related transcriptional regulator Regulator
  J5O00_RS26335 - 2809353..2809688 (-) 336 WP_257575234.1 hypothetical protein -
  J5O00_RS13430 - 2810260..2810850 (+) 591 WP_341849106.1 hypothetical protein -
  J5O00_RS27045 - 2810891..2811124 (+) 234 WP_341849107.1 hypothetical protein -
  J5O00_RS13435 - 2811173..2811471 (+) 299 Protein_2628 carbon storage regulator -
  J5O00_RS27050 - 2811477..2812158 (+) 682 Protein_2629 C39 family peptidase -
  J5O00_RS26350 - 2812268..2812471 (+) 204 WP_257575239.1 hypothetical protein -

Sequence

Protein


Download         Length: 80 a.a.        Molecular weight: 9597.12 Da        Isoelectric Point: 7.2742

>NTDB_id=491435 J5O00_RS26330 WP_257575543.1 2809067..2809309(-) (qstR) [Vibrio parahaemolyticus strain 64]
MYLEKLVLNYRHANLSEEQQHDELTCREKQILELLVYGISNQQIASRLFLSESTVKSHIYKFVQKNSMSILVMMRLSWYE

Nucleotide


Download         Length: 243 bp        

>NTDB_id=491435 J5O00_RS26330 WP_257575543.1 2809067..2809309(-) (qstR) [Vibrio parahaemolyticus strain 64]
ATGTACTTAGAGAAGTTAGTCCTCAATTATCGGCATGCAAATTTGTCCGAAGAACAGCAGCATGATGAGTTAACATGCAG
AGAGAAGCAGATTCTAGAGCTACTTGTGTACGGCATTTCAAATCAACAAATTGCTTCAAGGCTTTTTTTATCTGAAAGTA
CAGTGAAAAGCCATATATACAAGTTTGTACAAAAAAACTCGATGTCCATTCTCGTCATGATGCGGTTAAGTTGGTACGAA
TGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(23-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

52.632

71.25

0.375