Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IIE26_RS22085 Genome accession   NZ_CP062790
Coordinates   4445223..4446602 (+) Length   459 a.a.
NCBI ID   WP_192908014.1    Uniprot ID   -
Organism   Cytobacillus oceanisediminis strain YPW-V2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4440223..4451602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IIE26_RS22065 (IIE26_22065) - 4440339..4440800 (+) 462 WP_192908013.1 CtsR family transcriptional regulator -
  IIE26_RS22070 (IIE26_22070) - 4440824..4441372 (+) 549 WP_009336510.1 UvrB/UvrC motif-containing protein -
  IIE26_RS22075 (IIE26_22075) - 4441375..4442454 (+) 1080 WP_009336512.1 protein arginine kinase -
  IIE26_RS22080 (IIE26_22080) clpC 4442459..4444909 (+) 2451 WP_009336514.1 ATP-dependent protease ATP-binding subunit ClpC -
  IIE26_RS22085 (IIE26_22085) radA 4445223..4446602 (+) 1380 WP_192908014.1 DNA repair protein RadA Machinery gene
  IIE26_RS22090 (IIE26_22090) disA 4446605..4447678 (+) 1074 WP_009336517.1 DNA integrity scanning diadenylate cyclase DisA -
  IIE26_RS22095 (IIE26_22095) - 4447906..4448994 (+) 1089 WP_019382775.1 PIN/TRAM domain-containing protein -
  IIE26_RS22100 (IIE26_22100) ispD 4449080..4449766 (+) 687 WP_192908015.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  IIE26_RS22105 (IIE26_22105) ispF 4449780..4450265 (+) 486 WP_009336523.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49495.89 Da        Isoelectric Point: 7.1763

>NTDB_id=491420 IIE26_RS22085 WP_192908014.1 4445223..4446602(+) (radA) [Cytobacillus oceanisediminis strain YPW-V2]
MAKRKTKFMCQECGYESPKWMGKCPGCGQWNTMVEEVEKPASTRRGAFAHSQGSAIAAKATPITSIETVSEPRIHTDLIE
LNRVLGGGIVRGSLVLIGGDPGIGKSTLLLQVSSQLANRKHSVLYISGEESMRQTKLRADRLGVSSDSLLVYSETSLDEI
SRTIDSVSPDFVIIDSIQTIFHPEVTSAPGSVSQVRECTAELMRIGKTKGIAIFIVGHVTKEGSIAGPRLLEHMVDTVLY
FEGERHHTYRILRAVKNRFGSTNEMGIFEMKEFGLEEVANPSEIFLEERSQGAAGSTVVASMEGTRPVLVEIQALISPTS
FGNPRRMATGIDHNRVPLLMAVLEKRVGMLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFRDKPTKATDCIIGEVGL
TGEVRRVSRIEQRVQEAAKLGFERVILPANNLGGWSAPGGIELIGVSSVGEALKAALGG

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=491420 IIE26_RS22085 WP_192908014.1 4445223..4446602(+) (radA) [Cytobacillus oceanisediminis strain YPW-V2]
ATGGCTAAAAGAAAAACGAAATTCATGTGCCAGGAATGCGGCTATGAATCACCGAAGTGGATGGGGAAATGTCCGGGATG
CGGACAGTGGAATACGATGGTGGAAGAGGTGGAGAAGCCTGCTTCAACGAGAAGGGGCGCTTTTGCTCATTCACAGGGCT
CTGCCATAGCGGCGAAAGCTACACCGATTACATCCATTGAAACAGTCAGCGAACCACGCATACATACCGATTTAATAGAA
TTAAACCGTGTCCTTGGGGGAGGAATCGTTAGAGGTTCCCTTGTTCTTATTGGGGGAGATCCGGGCATCGGGAAATCAAC
GCTTCTTCTTCAAGTGTCATCACAGCTGGCGAACAGGAAGCATTCTGTTCTTTATATATCAGGGGAAGAATCCATGCGTC
AGACGAAGCTGCGTGCTGACCGCTTAGGTGTTTCTTCAGACAGTCTGCTTGTTTACTCGGAAACCAGCCTTGATGAAATC
AGCAGAACGATTGATTCAGTGAGTCCTGACTTTGTCATTATAGACTCCATTCAGACGATCTTTCATCCTGAAGTGACATC
AGCGCCTGGCAGCGTTTCTCAGGTCCGGGAATGTACCGCTGAGCTAATGCGCATCGGCAAAACGAAGGGAATTGCCATTT
TTATCGTAGGGCATGTTACAAAGGAAGGGTCCATTGCCGGTCCAAGACTTCTGGAGCATATGGTTGATACGGTTTTGTAC
TTTGAGGGTGAACGCCATCATACATACCGGATCCTGCGGGCAGTGAAAAACAGATTTGGCTCAACAAACGAGATGGGCAT
TTTTGAAATGAAGGAATTTGGGCTTGAGGAAGTGGCTAACCCGTCAGAAATTTTCCTGGAAGAGCGGTCACAGGGAGCTG
CCGGTTCAACAGTCGTTGCTTCTATGGAAGGAACGAGGCCAGTCCTGGTTGAAATTCAGGCGCTGATTTCTCCAACAAGC
TTTGGAAATCCAAGACGAATGGCGACAGGAATTGATCATAACCGGGTTCCGCTCCTGATGGCGGTTTTGGAAAAACGGGT
CGGGATGCTCCTGCAAAATCAGGATGCATACTTAAAAGTCGCTGGCGGAGTGAAGCTTGATGAACCGGCTATTGATCTGG
CCATTGCTGTGAGTATTGCGTCAAGCTTTCGGGATAAGCCAACAAAGGCAACAGACTGCATCATCGGAGAAGTAGGACTC
ACAGGAGAGGTCAGGAGAGTATCAAGAATAGAACAAAGAGTGCAGGAGGCAGCCAAGCTGGGTTTTGAGCGGGTTATCCT
GCCGGCGAACAATCTTGGCGGCTGGAGCGCACCGGGAGGAATTGAACTAATCGGAGTAAGTTCGGTCGGTGAAGCTCTTA
AGGCTGCGTTAGGGGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(365-431)

AAA domain (AAA_25)

(73-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

77.174

100

0.773
  radA Streptococcus pneumoniae Rx1

60.349

100

0.603
  radA Streptococcus pneumoniae D39

60.349

100

0.603
  radA Streptococcus pneumoniae R6

60.349

100

0.603
  radA Streptococcus pneumoniae TIGR4

60.349

100

0.603
  radA Streptococcus mitis NCTC 12261

60.349

100

0.603
  radA Streptococcus mitis SK321

60.349

100

0.603