Detailed information
Bioinformatically predicted
Overview
| Name | radA/sms | Type | Machinery gene |
| Locus tag | J5O00_RS13470 | Genome accession | NZ_CP074415 |
| Coordinates | 2819997..2821376 (-) | Length | 459 a.a. |
| NCBI ID | WP_005456064.1 | Uniprot ID | Q87M29 |
| Organism | Vibrio parahaemolyticus strain 64 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2814997..2826376
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J5O00_RS13455 | - | 2816255..2816464 (-) | 210 | WP_005494095.1 | DUF1127 domain-containing protein | - |
| J5O00_RS13460 | - | 2816563..2817489 (+) | 927 | WP_029862068.1 | LysR substrate-binding domain-containing protein | - |
| J5O00_RS13465 | fusA | 2817690..2819780 (-) | 2091 | WP_005456593.1 | elongation factor G | - |
| J5O00_RS13470 | radA/sms | 2819997..2821376 (-) | 1380 | WP_005456064.1 | DNA repair protein RadA | Machinery gene |
| J5O00_RS13475 | - | 2821513..2823861 (+) | 2349 | WP_029806278.1 | PilZ domain-containing protein | - |
| J5O00_RS13480 | serB | 2823904..2824884 (-) | 981 | WP_020841223.1 | phosphoserine phosphatase | - |
| J5O00_RS13485 | - | 2824976..2825581 (+) | 606 | WP_005481596.1 | YtjB family periplasmic protein | - |
Sequence
Protein
Download Length: 459 a.a. Molecular weight: 49221.64 Da Isoelectric Point: 7.4131
>NTDB_id=491406 J5O00_RS13470 WP_005456064.1 2819997..2821376(-) (radA/sms) [Vibrio parahaemolyticus strain 64]
MAKAKRAYVCNDCGADFPRWQGQCNACGAWNTITEVRIAASPTVARNERLSGYAGSATESKVQTLSEIDLQEVPRFTSGF
KELDRVLGGGVVPGAAILIGGNPGAGKSTLLLQTMCTLSGLMPTLYVTGEESLQQVAMRASRLGLPKEHLKMLSETNVDK
ICQIAEKEQPRIMVIDSIQVMHVSDVQSSPGSVAQVRESATALTRYAKQNNVAVFIVGHVTKDGTLAGPKVLEHIIDCSV
LLDGGTDSRFRTLRSHKNRFGAVNELGVFAMTGQGLKEVSNPSAIFLSRGEEETSGSSVMVVWEGTRPLLVEIQALVDYS
QLANPRRVAVGLEQNRLSLLLAVLHKHGGLQMADQDVFVNVVGGVKVTETSADLALVMALLSSFRDRPLPKDVVVFGEVG
LAGEIRPVPSGQERLNEAFKHGFKKAIVPAANMPKGGIPGMQIHGVKKLSEAIEAFDEL
MAKAKRAYVCNDCGADFPRWQGQCNACGAWNTITEVRIAASPTVARNERLSGYAGSATESKVQTLSEIDLQEVPRFTSGF
KELDRVLGGGVVPGAAILIGGNPGAGKSTLLLQTMCTLSGLMPTLYVTGEESLQQVAMRASRLGLPKEHLKMLSETNVDK
ICQIAEKEQPRIMVIDSIQVMHVSDVQSSPGSVAQVRESATALTRYAKQNNVAVFIVGHVTKDGTLAGPKVLEHIIDCSV
LLDGGTDSRFRTLRSHKNRFGAVNELGVFAMTGQGLKEVSNPSAIFLSRGEEETSGSSVMVVWEGTRPLLVEIQALVDYS
QLANPRRVAVGLEQNRLSLLLAVLHKHGGLQMADQDVFVNVVGGVKVTETSADLALVMALLSSFRDRPLPKDVVVFGEVG
LAGEIRPVPSGQERLNEAFKHGFKKAIVPAANMPKGGIPGMQIHGVKKLSEAIEAFDEL
Nucleotide
Download Length: 1380 bp
>NTDB_id=491406 J5O00_RS13470 WP_005456064.1 2819997..2821376(-) (radA/sms) [Vibrio parahaemolyticus strain 64]
ATGGCGAAAGCAAAACGAGCGTATGTTTGTAATGATTGTGGCGCGGATTTTCCACGTTGGCAGGGACAATGTAATGCGTG
TGGTGCATGGAATACGATCACAGAGGTGCGCATTGCTGCTTCGCCAACCGTTGCTCGCAATGAACGCTTAAGCGGTTATG
CTGGTTCGGCGACAGAATCGAAAGTCCAAACCTTATCTGAAATCGATCTGCAAGAAGTGCCGCGATTCACTAGTGGTTTT
AAAGAGCTCGATCGTGTGCTTGGTGGTGGTGTCGTACCTGGTGCGGCGATTCTGATAGGTGGTAACCCTGGCGCGGGTAA
GTCGACGTTGCTTCTTCAAACTATGTGTACGTTATCAGGGCTGATGCCGACACTTTACGTTACGGGTGAGGAATCGCTTC
AACAGGTTGCGATGCGCGCGTCTCGTCTTGGTCTGCCAAAAGAGCACCTGAAGATGCTATCAGAAACCAACGTCGATAAA
ATTTGCCAAATTGCAGAGAAAGAGCAGCCCAGAATTATGGTGATTGACTCGATTCAGGTTATGCACGTTTCTGATGTTCA
ATCGTCACCGGGCAGTGTTGCTCAGGTGCGAGAATCTGCGACGGCACTGACGCGATACGCAAAACAGAACAATGTTGCGG
TATTTATTGTTGGTCACGTAACGAAAGATGGTACTCTTGCCGGCCCTAAAGTCCTTGAGCACATTATTGACTGTTCTGTC
TTGCTTGATGGCGGAACAGATAGTCGTTTCCGTACACTGCGCAGCCACAAAAACCGTTTTGGTGCGGTAAATGAATTAGG
CGTGTTTGCGATGACGGGGCAGGGACTGAAAGAAGTAAGTAACCCATCGGCGATTTTCCTTTCTCGTGGCGAAGAAGAGA
CGTCAGGATCTTCGGTCATGGTTGTATGGGAAGGTACACGTCCTCTATTAGTAGAGATTCAAGCGCTGGTGGACTACTCG
CAATTGGCAAACCCTCGTCGCGTAGCGGTTGGTTTGGAGCAGAATCGTCTCTCCTTATTATTAGCCGTATTGCATAAGCA
CGGTGGTCTGCAAATGGCTGATCAAGACGTGTTTGTGAATGTAGTCGGCGGCGTTAAGGTAACAGAAACCAGTGCGGATC
TTGCTTTAGTGATGGCGTTACTATCAAGCTTTCGCGATCGTCCGTTGCCAAAAGATGTGGTGGTATTTGGCGAAGTTGGT
TTGGCTGGCGAGATTCGTCCGGTACCTAGTGGTCAAGAGCGTTTGAACGAGGCATTTAAGCACGGCTTCAAAAAGGCAAT
TGTCCCGGCTGCTAATATGCCAAAAGGTGGCATTCCGGGGATGCAAATCCACGGCGTTAAGAAGTTGTCAGAGGCTATTG
AGGCTTTTGACGAGCTGTAA
ATGGCGAAAGCAAAACGAGCGTATGTTTGTAATGATTGTGGCGCGGATTTTCCACGTTGGCAGGGACAATGTAATGCGTG
TGGTGCATGGAATACGATCACAGAGGTGCGCATTGCTGCTTCGCCAACCGTTGCTCGCAATGAACGCTTAAGCGGTTATG
CTGGTTCGGCGACAGAATCGAAAGTCCAAACCTTATCTGAAATCGATCTGCAAGAAGTGCCGCGATTCACTAGTGGTTTT
AAAGAGCTCGATCGTGTGCTTGGTGGTGGTGTCGTACCTGGTGCGGCGATTCTGATAGGTGGTAACCCTGGCGCGGGTAA
GTCGACGTTGCTTCTTCAAACTATGTGTACGTTATCAGGGCTGATGCCGACACTTTACGTTACGGGTGAGGAATCGCTTC
AACAGGTTGCGATGCGCGCGTCTCGTCTTGGTCTGCCAAAAGAGCACCTGAAGATGCTATCAGAAACCAACGTCGATAAA
ATTTGCCAAATTGCAGAGAAAGAGCAGCCCAGAATTATGGTGATTGACTCGATTCAGGTTATGCACGTTTCTGATGTTCA
ATCGTCACCGGGCAGTGTTGCTCAGGTGCGAGAATCTGCGACGGCACTGACGCGATACGCAAAACAGAACAATGTTGCGG
TATTTATTGTTGGTCACGTAACGAAAGATGGTACTCTTGCCGGCCCTAAAGTCCTTGAGCACATTATTGACTGTTCTGTC
TTGCTTGATGGCGGAACAGATAGTCGTTTCCGTACACTGCGCAGCCACAAAAACCGTTTTGGTGCGGTAAATGAATTAGG
CGTGTTTGCGATGACGGGGCAGGGACTGAAAGAAGTAAGTAACCCATCGGCGATTTTCCTTTCTCGTGGCGAAGAAGAGA
CGTCAGGATCTTCGGTCATGGTTGTATGGGAAGGTACACGTCCTCTATTAGTAGAGATTCAAGCGCTGGTGGACTACTCG
CAATTGGCAAACCCTCGTCGCGTAGCGGTTGGTTTGGAGCAGAATCGTCTCTCCTTATTATTAGCCGTATTGCATAAGCA
CGGTGGTCTGCAAATGGCTGATCAAGACGTGTTTGTGAATGTAGTCGGCGGCGTTAAGGTAACAGAAACCAGTGCGGATC
TTGCTTTAGTGATGGCGTTACTATCAAGCTTTCGCGATCGTCCGTTGCCAAAAGATGTGGTGGTATTTGGCGAAGTTGGT
TTGGCTGGCGAGATTCGTCCGGTACCTAGTGGTCAAGAGCGTTTGAACGAGGCATTTAAGCACGGCTTCAAAAAGGCAAT
TGTCCCGGCTGCTAATATGCCAAAAGGTGGCATTCCGGGGATGCAAATCCACGGCGTTAAGAAGTTGTCAGAGGCTATTG
AGGCTTTTGACGAGCTGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA/sms | Bacillus subtilis subsp. subtilis str. 168 |
46.711 |
99.346 |
0.464 |
| radA | Streptococcus mitis SK321 |
44.079 |
99.346 |
0.438 |
| radA | Streptococcus pneumoniae Rx1 |
43.516 |
99.129 |
0.431 |
| radA | Streptococcus pneumoniae D39 |
43.516 |
99.129 |
0.431 |
| radA | Streptococcus pneumoniae R6 |
43.516 |
99.129 |
0.431 |
| radA | Streptococcus pneumoniae TIGR4 |
43.516 |
99.129 |
0.431 |
| radA | Streptococcus mitis NCTC 12261 |
43.516 |
99.129 |
0.431 |