Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   J5O00_RS07795 Genome accession   NZ_CP074415
Coordinates   1629829..1630809 (-) Length   326 a.a.
NCBI ID   WP_029804924.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 64     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1624829..1635809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5O00_RS07785 - 1625329..1627773 (+) 2445 WP_219079309.1 collagenase -
  J5O00_RS07790 - 1628023..1629819 (-) 1797 WP_029804923.1 aminopeptidase P family protein -
  J5O00_RS07795 amiE 1629829..1630809 (-) 981 WP_029804924.1 oligopeptide/dipeptide ABC transporter ATP-binding protein Regulator
  J5O00_RS07800 - 1630819..1631802 (-) 984 WP_024702651.1 oligopeptide/dipeptide ABC transporter ATP-binding protein -
  J5O00_RS07805 - 1631813..1632745 (-) 933 WP_029804925.1 ABC transporter permease subunit -
  J5O00_RS07810 oppB 1632755..1633675 (-) 921 WP_029804926.1 oligopeptide ABC transporter permease OppB -
  J5O00_RS07815 - 1633842..1635452 (-) 1611 WP_029804927.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36495.30 Da        Isoelectric Point: 8.1168

>NTDB_id=491390 J5O00_RS07795 WP_029804924.1 1629829..1630809(-) (amiE) [Vibrio parahaemolyticus strain 64]
MNQKEVLLSARELQVHFPVSRHLIPSRRKIVQAVNGIDLDVYRGETLGIVGESGCGKSTLARALLRLVEPTHGKLTWKGE
DMRGFSKNKLTRRRQEFQMIFQDPSASLNPRLTISECIAEPLLTHQPQLKRAEVEKRVIEMMDKVGLLASQRNRYPHEFS
GGQCQRVGIARALILNPDLVVCDEPVSALDVSIQAQVINLLDDLKQEMGLTLVMIAHDLSVVRHISDRVMVMYLGKPMEV
GRYDQVFDDAQHPYTKALLSAVPIANPQLARNRDIQLLPGDLPSPLTPPSGCVFRTRCPEATELCGQQSPVKTGTEQHHI
YCSNMI

Nucleotide


Download         Length: 981 bp        

>NTDB_id=491390 J5O00_RS07795 WP_029804924.1 1629829..1630809(-) (amiE) [Vibrio parahaemolyticus strain 64]
ATGAATCAGAAAGAAGTGTTATTGTCCGCTCGCGAACTGCAAGTGCATTTTCCTGTTTCGCGACACCTCATTCCGAGCCG
AAGAAAGATCGTACAAGCCGTCAACGGCATCGATTTGGATGTTTATCGAGGCGAAACGCTCGGCATTGTTGGCGAATCAG
GCTGCGGAAAATCCACCTTAGCACGTGCTCTGCTGCGCTTAGTTGAACCCACGCACGGCAAGCTCACTTGGAAAGGTGAA
GACATGCGTGGCTTCAGCAAAAACAAGTTAACACGTCGTCGCCAAGAATTTCAGATGATATTCCAAGACCCATCGGCGAG
CCTCAATCCGAGATTGACGATTTCAGAATGTATCGCAGAGCCGTTACTCACACACCAGCCTCAACTTAAACGCGCCGAAG
TCGAAAAACGCGTCATTGAGATGATGGACAAAGTGGGTCTGTTGGCAAGCCAACGTAACCGATATCCGCATGAGTTTTCT
GGCGGTCAGTGCCAACGTGTTGGCATCGCGCGAGCCTTAATCCTCAATCCGGACTTGGTGGTGTGTGATGAACCCGTCAG
CGCATTGGATGTTTCGATTCAAGCGCAGGTCATTAATTTGCTCGACGACCTTAAACAAGAAATGGGACTGACACTGGTGA
TGATCGCTCATGACCTAAGCGTTGTGCGCCATATCAGCGACCGAGTGATGGTGATGTACCTTGGCAAACCAATGGAAGTG
GGACGCTACGACCAAGTGTTCGACGATGCTCAGCATCCCTACACAAAAGCATTGCTTTCTGCGGTACCGATTGCCAATCC
GCAACTTGCACGCAACCGCGACATCCAATTGTTGCCCGGAGACCTCCCTTCTCCGCTCACCCCACCCAGCGGTTGTGTTT
TTAGAACCCGATGCCCAGAAGCTACGGAACTATGTGGGCAGCAAAGCCCAGTCAAAACAGGCACTGAGCAACATCATATT
TACTGTTCAAACATGATTTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(35-186)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

40.193

95.399

0.383
  amiE Streptococcus thermophilus LMD-9

40.193

95.399

0.383
  amiF Streptococcus salivarius strain HSISS4

45.091

84.356

0.38
  amiF Streptococcus thermophilus LMG 18311

45.421

83.742

0.38
  amiF Streptococcus thermophilus LMD-9

45.421

83.742

0.38
  amiE Streptococcus salivarius strain HSISS4

39.103

95.706

0.374
  oppD Streptococcus mutans UA159

38.339

96.012

0.368