Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   IIE26_RS04890 Genome accession   NZ_CP062790
Coordinates   962519..963769 (+) Length   416 a.a.
NCBI ID   WP_192908440.1    Uniprot ID   -
Organism   Cytobacillus oceanisediminis strain YPW-V2     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 957519..968769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IIE26_RS04865 (IIE26_04865) ymfI 958728..959450 (+) 723 WP_019381797.1 elongation factor P 5-aminopentanone reductase -
  IIE26_RS04870 (IIE26_04870) - 959568..959825 (+) 258 WP_009330675.1 DUF3243 domain-containing protein -
  IIE26_RS04875 (IIE26_04875) - 960059..960850 (+) 792 WP_009330674.1 YmfK family protein -
  IIE26_RS04880 (IIE26_04880) - 960872..961792 (+) 921 WP_071156594.1 helix-turn-helix domain-containing protein -
  IIE26_RS04885 (IIE26_04885) pgsA 961913..962491 (+) 579 WP_071156592.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IIE26_RS04890 (IIE26_04890) cinA 962519..963769 (+) 1251 WP_192908440.1 competence/damage-inducible protein A Machinery gene
  IIE26_RS04895 (IIE26_04895) recA 964041..965081 (+) 1041 WP_009330669.1 recombinase RecA Machinery gene
  IIE26_RS04900 (IIE26_04900) rny 965857..967419 (+) 1563 WP_019381799.1 ribonuclease Y -
  IIE26_RS04905 (IIE26_04905) - 967549..968346 (+) 798 WP_009330667.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45271.91 Da        Isoelectric Point: 4.9251

>NTDB_id=491389 IIE26_RS04890 WP_192908440.1 962519..963769(+) (cinA) [Cytobacillus oceanisediminis strain YPW-V2]
MNAEIIAVGSELLLGQIVNTNARFLSRQLAELGINVFYHSVVGDNPERLKSVIKIAEDRSDLIVFTGGLGPTKDDLTKET
IARHLGKKLVMDEQALESIQMYFKRTNREMTENNKKQALVLEDAQVLPNEHGMAPGMISDNGGHVFMLLPGPPNEMEPMF
LKHAFPALQSKLGTDDVIVSRVLHFFGIGEAMLETEIEDIIDAQSNPTIAPLASDGEVTLRLTAKHSQPNTAMMLMDETE
AKILGRVGEFFYGYDDTSLMHELTKLIKENNMTISAAESLTGGMFQQEFTSIPGAGGLLKGGVVCYTNEVKAEVLKVRKE
TIDNYGVVSAQCAAELAENVASLTNSDIGISFTGVAGPDELEGNPVGTVYIGIWIKGKPVQTEKLNLGGTRAANRVRTVK
YGCHFLIKALKECQSA

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=491389 IIE26_RS04890 WP_192908440.1 962519..963769(+) (cinA) [Cytobacillus oceanisediminis strain YPW-V2]
ATGAATGCAGAAATTATAGCTGTCGGGTCTGAGCTTTTACTTGGACAAATCGTTAATACAAATGCCCGCTTTCTTTCCCG
GCAGCTTGCTGAACTGGGCATTAATGTTTTTTACCATTCAGTGGTTGGCGATAACCCTGAGCGCCTGAAGTCTGTGATCA
AAATTGCGGAAGATCGATCAGATCTGATCGTTTTCACTGGCGGGCTGGGGCCGACAAAGGATGATTTGACGAAAGAAACG
ATTGCCCGCCATCTAGGCAAAAAGCTTGTCATGGATGAGCAGGCGCTTGAATCCATACAGATGTATTTTAAACGGACCAA
CAGAGAGATGACTGAGAATAATAAAAAACAGGCACTTGTACTTGAGGATGCACAAGTACTTCCTAACGAGCATGGAATGG
CTCCTGGAATGATTTCCGATAATGGCGGGCATGTTTTTATGCTACTTCCGGGACCTCCAAATGAAATGGAGCCTATGTTC
CTGAAACATGCTTTTCCGGCCCTGCAATCCAAGCTGGGCACAGATGATGTGATTGTTTCCCGGGTATTGCACTTTTTCGG
GATTGGAGAAGCCATGCTTGAAACTGAGATTGAAGATATTATCGATGCGCAGAGTAATCCAACAATTGCTCCGCTTGCCT
CTGATGGAGAAGTCACGCTAAGGCTTACGGCAAAGCATAGCCAGCCTAACACGGCAATGATGCTGATGGATGAAACTGAA
GCTAAAATCCTCGGCCGTGTCGGCGAATTCTTCTATGGCTACGATGACACTTCCTTGATGCATGAGCTCACCAAGCTGAT
CAAGGAAAACAATATGACTATTTCCGCTGCTGAGAGTTTAACAGGCGGCATGTTTCAGCAGGAGTTTACATCCATTCCGG
GAGCAGGCGGTCTTCTAAAAGGCGGAGTGGTTTGCTATACAAACGAAGTTAAGGCTGAGGTTTTAAAAGTTCGCAAAGAA
ACGATTGATAACTACGGGGTCGTCAGTGCTCAGTGTGCAGCAGAGCTTGCTGAGAATGTCGCCAGTCTGACTAACTCAGA
TATCGGAATCAGCTTCACAGGTGTTGCTGGTCCTGACGAACTGGAAGGCAACCCGGTGGGAACCGTATATATAGGCATCT
GGATAAAAGGTAAGCCTGTCCAGACTGAAAAGCTGAACCTTGGGGGAACCAGGGCGGCAAACCGTGTCCGTACGGTAAAA
TATGGCTGCCATTTTCTTATAAAAGCATTAAAAGAATGTCAGAGCGCCTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(257-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

62.195

98.558

0.613
  cinA Streptococcus mitis SK321

46.905

100

0.474
  cinA Streptococcus pneumoniae TIGR4

46.667

100

0.471
  cinA Streptococcus mitis NCTC 12261

46.429

100

0.469
  cinA Streptococcus pneumoniae Rx1

46.19

100

0.466
  cinA Streptococcus pneumoniae R6

46.19

100

0.466
  cinA Streptococcus pneumoniae D39

45.952

100

0.464
  cinA Streptococcus mutans UA159

46.65

96.875

0.452
  cinA Streptococcus suis isolate S10

38.168

94.471

0.361