Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   IIE26_RS02400 Genome accession   NZ_CP062790
Coordinates   469000..470817 (+) Length   605 a.a.
NCBI ID   WP_009331201.1    Uniprot ID   -
Organism   Cytobacillus oceanisediminis strain YPW-V2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 464000..475817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IIE26_RS02375 (IIE26_02375) - 464540..464728 (-) 189 WP_009331206.1 hypothetical protein -
  IIE26_RS02380 (IIE26_02380) - 464977..465552 (+) 576 WP_009331205.1 GNAT family N-acetyltransferase -
  IIE26_RS02385 (IIE26_02385) spxA 466027..466422 (+) 396 WP_009331204.1 transcriptional regulator SpxA -
  IIE26_RS02390 (IIE26_02390) mecA 466838..467500 (+) 663 WP_009331203.1 adaptor protein MecA -
  IIE26_RS02395 (IIE26_02395) - 467688..468878 (+) 1191 WP_019381489.1 competence protein CoiA -
  IIE26_RS02400 (IIE26_02400) pepF 469000..470817 (+) 1818 WP_009331201.1 oligoendopeptidase F Regulator
  IIE26_RS02405 (IIE26_02405) - 470920..471093 (-) 174 WP_019381491.1 hypothetical protein -
  IIE26_RS02410 (IIE26_02410) - 471395..472270 (-) 876 WP_009331200.1 ClpXP adapter SpxH family protein -
  IIE26_RS02415 (IIE26_02415) - 472267..472671 (-) 405 WP_009331199.1 protozoan/cyano globin family protein -
  IIE26_RS02420 (IIE26_02420) - 473133..473774 (-) 642 WP_009331198.1 lytic transglycosylase domain-containing protein -
  IIE26_RS02425 (IIE26_02425) - 473807..474397 (-) 591 WP_009331197.1 CYTH domain-containing protein -
  IIE26_RS02430 (IIE26_02430) - 474621..474986 (+) 366 WP_009331196.1 hypothetical protein -
  IIE26_RS02435 (IIE26_02435) - 475108..475746 (+) 639 WP_009331195.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69912.43 Da        Isoelectric Point: 4.9500

>NTDB_id=491385 IIE26_RS02400 WP_009331201.1 469000..470817(+) (pepF) [Cytobacillus oceanisediminis strain YPW-V2]
MANETTVKKLPARNEISPEDTWRLEDIFPSDEDWDKEYNEVQKLIPNAGKYQGRLGESAETLYEALQFQDHILSRLGKLY
TYAHMRYDQDTTNSFYQSMDDKIKNLYSEAASVLAYIVPELLAEDEAKIAGFLEEKTELQLYKHSLEEINLQRPHVLSAE
QESLLAQASEVLGASSNTFGMLNNADLEFPSIKDENGEDVEITHGRFIRFLESDEQRVRHDAFKAVYETYGKFRNTFAST
LSGNIKKDNFNAKIRNYESARHAALAANNIPESVYENLVNTINDNLHLLHRYVKLRKKVLGVEELHMYDLYTPLVKEVKM
EIPYKEAKDLILKGLKPLGGDYLNILKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTCNEALLNDYLLKTIDDDKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHKKAQ
NNEALTADSLTKEYYELNKKYFGEEDIVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILQEGQPAVDRYIEF
LKSGSSDYPIEVLKKAGVDMTSSKPIEDACKVFEEKLNEMESLLS

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=491385 IIE26_RS02400 WP_009331201.1 469000..470817(+) (pepF) [Cytobacillus oceanisediminis strain YPW-V2]
ATGGCTAATGAGACTACTGTGAAGAAACTGCCGGCAAGGAATGAGATTTCACCAGAAGATACCTGGCGTTTGGAGGATAT
TTTTCCTTCTGATGAAGATTGGGACAAGGAATATAATGAAGTGCAAAAGCTAATCCCTAATGCAGGCAAGTATCAAGGCA
GGCTTGGGGAAAGTGCTGAAACATTATATGAAGCGCTGCAGTTTCAGGATCATATACTCTCGCGCCTTGGGAAGCTTTAT
ACATATGCCCATATGCGTTATGACCAGGATACAACAAACTCATTTTATCAGAGCATGGATGACAAAATAAAAAATTTATA
TTCAGAAGCTGCAAGTGTTCTCGCGTATATTGTTCCTGAATTGCTTGCTGAGGATGAAGCGAAGATTGCAGGTTTTTTAG
AGGAAAAAACGGAGCTGCAATTATATAAACACTCCCTTGAGGAAATTAATCTCCAAAGGCCTCATGTATTATCTGCTGAG
CAGGAATCCCTCCTTGCCCAGGCTTCCGAGGTGCTTGGGGCTTCAAGCAATACATTTGGCATGCTGAATAATGCTGATTT
GGAGTTTCCGTCCATTAAGGATGAAAATGGCGAAGATGTTGAAATTACTCATGGAAGATTCATCCGTTTTCTCGAAAGTG
ATGAGCAGCGTGTCCGTCATGATGCATTCAAAGCGGTATATGAGACTTATGGGAAGTTCCGCAATACTTTCGCAAGCACT
CTAAGCGGAAATATTAAAAAGGATAATTTCAATGCAAAGATCCGCAATTATGAATCTGCACGACATGCTGCTCTTGCTGC
GAACAATATTCCTGAAAGTGTTTATGAAAATTTAGTCAACACCATTAACGATAACCTGCACTTACTTCACCGATATGTCA
AACTCCGTAAAAAGGTTCTTGGGGTCGAGGAGCTTCATATGTATGATCTTTACACTCCTTTGGTGAAGGAAGTAAAAATG
GAAATCCCATACAAAGAAGCAAAAGATCTAATCTTAAAAGGACTGAAGCCGCTTGGTGGGGACTACTTAAATATTCTAAA
AGAGGGCTTTGAAAATCGCTGGGTAGATGTTCATGAGAATAAGGGCAAAAGAAGCGGTGCCTATTCATCGGGAACATATG
GCACAAATCCATATATACTGATGAACTGGCAGGACAATGTAAACAATCTATTTACCCTTGCTCACGAGTTTGGGCATTCT
GTTCACAGCTATTACACAAGAAAATATCAGCCATATCCATATGGAAATTATTCAATTTTTGTTGCAGAGGTTGCATCCAC
ATGTAATGAAGCCCTCTTAAATGATTATCTGCTCAAAACAATAGATGATGATAAGAAGCGTTTGTATCTTCTGAATCATT
ATCTTGAAGGCTTTAGGGGAACTGTTTTCCGCCAGACAATGTTTGCAGAGTTTGAACATCTCATCCATAAAAAGGCGCAA
AACAATGAAGCTTTAACCGCAGATTCATTGACAAAAGAATATTATGAGCTCAATAAGAAGTATTTTGGGGAAGAAGACAT
CGTTATTGATGAAGAAATCGGCCTGGAATGGTCCAGAATCCCGCATTTCTACTATAATTATTATGTTTATCAGTATGCAA
CAGGCTTCAGTGCAGCAACTGCATTAAGCAAGCAAATTCTTCAGGAAGGTCAGCCTGCAGTTGACAGATACATTGAATTC
CTGAAATCCGGCAGCTCAGATTATCCAATAGAGGTGCTAAAGAAAGCTGGTGTTGATATGACGAGCAGCAAGCCGATTGA
AGATGCCTGCAAAGTATTCGAGGAAAAGCTTAACGAAATGGAAAGCTTGCTTTCTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.663

98.182

0.488