Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   IIE26_RS00850 Genome accession   NZ_CP062790
Coordinates   166294..167097 (+) Length   267 a.a.
NCBI ID   WP_009335828.1    Uniprot ID   -
Organism   Cytobacillus oceanisediminis strain YPW-V2     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 161294..172097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IIE26_RS00820 (IIE26_00820) - 161720..162388 (-) 669 WP_071155947.1 vWA domain-containing protein -
  IIE26_RS00825 (IIE26_00825) - 162462..163523 (-) 1062 WP_192908299.1 M20 family metallopeptidase -
  IIE26_RS00830 (IIE26_00830) - 163832..164335 (+) 504 WP_019383496.1 DoxX family protein -
  IIE26_RS00835 (IIE26_00835) - 164645..164833 (-) 189 WP_009335826.1 YfhD family protein -
  IIE26_RS00840 (IIE26_00840) - 164926..165051 (-) 126 WP_081757217.1 YfhE family protein -
  IIE26_RS00845 (IIE26_00845) - 165125..166030 (-) 906 WP_009335827.1 TIGR01777 family oxidoreductase -
  IIE26_RS00850 (IIE26_00850) recX 166294..167097 (+) 804 WP_009335828.1 recombination regulator RecX Regulator
  IIE26_RS00855 (IIE26_00855) - 167116..167787 (-) 672 WP_071155949.1 SDR family NAD(P)-dependent oxidoreductase -
  IIE26_RS00860 (IIE26_00860) - 168015..168344 (+) 330 WP_009335830.1 YfhH family protein -
  IIE26_RS00865 (IIE26_00865) - 168388..168546 (-) 159 WP_009335831.1 YpzG family protein -
  IIE26_RS00870 (IIE26_00870) - 168567..168737 (-) 171 WP_009335832.1 small, acid-soluble spore protein K -
  IIE26_RS00875 (IIE26_00875) - 168866..169135 (+) 270 WP_009335833.1 YfhJ family protein -
  IIE26_RS00880 (IIE26_00880) - 169168..170148 (-) 981 WP_009335834.1 metal-dependent hydrolase -
  IIE26_RS00885 (IIE26_00885) mutY 170382..171482 (+) 1101 WP_071155951.1 A/G-specific adenine glycosylase -
  IIE26_RS00890 (IIE26_00890) - 171515..171739 (-) 225 WP_192908300.1 hypothetical protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31749.21 Da        Isoelectric Point: 6.1897

>NTDB_id=491373 IIE26_RS00850 WP_009335828.1 166294..167097(+) (recX) [Cytobacillus oceanisediminis strain YPW-V2]
MPIITKITFQKKNTDRYNIYMDYGKGEEYAFSVDEDVLIKHQLKKGMELDEFSLNEIGYQDDIRKSYNMAIQYLSRRMRS
ETEVRKHLADKEVEEPVIQEVVHKLYDYKFLNDEEYAKAFVRTQMNTSDKGKGLIRTELKEKGISPKLIDKALEVYSREA
ELSTAIRLCEKHAQKYGRDSSKILKQKLEQMLMRKGFNFDIIQEAISETEIEKEEDEELAALKYQAEKAKRKYANLPEFE
YRQKMKQTLFRKGFSFDLIDRYLSDEE

Nucleotide


Download         Length: 804 bp        

>NTDB_id=491373 IIE26_RS00850 WP_009335828.1 166294..167097(+) (recX) [Cytobacillus oceanisediminis strain YPW-V2]
ATGCCGATCATTACGAAAATCACATTTCAGAAAAAAAACACAGACCGCTACAATATATATATGGATTATGGGAAAGGTGA
AGAATATGCATTTAGTGTGGATGAAGATGTATTAATAAAACATCAGCTCAAAAAAGGAATGGAGCTTGATGAATTTTCAC
TAAATGAAATTGGCTATCAGGATGATATCCGGAAATCCTATAACATGGCTATTCAGTATTTATCCAGAAGGATGCGCTCA
GAAACCGAAGTCCGCAAACATTTAGCTGACAAAGAAGTTGAAGAACCGGTTATTCAGGAAGTTGTTCACAAATTGTATGA
TTACAAATTTTTGAACGATGAAGAATATGCAAAAGCTTTTGTGCGTACACAAATGAACACATCAGATAAAGGGAAAGGTT
TAATCCGCACTGAACTAAAGGAGAAAGGGATATCCCCTAAATTAATCGATAAGGCGCTGGAGGTGTATTCAAGGGAAGCT
GAATTAAGTACAGCAATAAGGCTGTGTGAAAAGCATGCACAGAAATATGGCCGTGATTCATCAAAGATCCTCAAACAAAA
ACTGGAGCAGATGTTAATGCGTAAAGGTTTTAATTTTGACATCATTCAAGAAGCAATATCTGAAACGGAGATTGAAAAAG
AAGAAGATGAAGAATTGGCTGCCCTAAAGTATCAAGCGGAGAAAGCTAAGAGGAAATATGCTAATCTTCCTGAATTTGAA
TACAGGCAAAAAATGAAACAAACCTTATTTAGAAAGGGCTTTTCGTTTGATTTAATTGATCGATATTTAAGTGATGAAGA
ATAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(88-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

49.064

100

0.491