Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   CA347_RS01890 Genome accession   NC_021554
Coordinates   417258..418103 (+) Length   281 a.a.
NCBI ID   WP_001621659.1    Uniprot ID   -
Organism   Staphylococcus aureus CA-347     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 412258..423103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA347_RS01875 (CA347_370) - 412527..414368 (-) 1842 WP_000077313.1 bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase -
  CA347_RS01880 metC 414337..415496 (-) 1160 Protein_368 cystathionine beta-lyase MetC -
  CA347_RS01885 (CA347_373) - 415493..416596 (-) 1104 WP_000655695.1 PLP-dependent transferase -
  CA347_RS01890 (CA347_374) spo0J 417258..418103 (+) 846 WP_001621659.1 ParB/RepB/Spo0J family partition protein Regulator
  CA347_RS01895 (CA347_375) - 418257..419138 (+) 882 WP_000373079.1 mechanosensitive ion channel family protein -
  CA347_RS01900 (CA347_376) - 419168..419371 (+) 204 WP_000157348.1 DUF951 domain-containing protein -
  CA347_RS01905 (CA347_377) ychF 419383..420480 (+) 1098 WP_001218729.1 redox-regulated ATPase YchF -
  CA347_RS01910 (CA347_378) - 420566..420757 (-) 192 WP_001052483.1 hypothetical protein -
  CA347_RS01920 (CA347_379) rpsF 421001..421297 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  CA347_RS01925 (CA347_380) ssbA 421318..421821 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  CA347_RS01930 (CA347_381) rpsR 421873..422115 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  CA347_RS01935 (CA347_382) - 422353..423096 (-) 744 Protein_378 Abi family protein -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 32797.82 Da        Isoelectric Point: 10.0000

>NTDB_id=49137 CA347_RS01890 WP_001621659.1 417258..418103(+) (spo0J) [Staphylococcus aureus CA-347]
MSELSKSEDQRITKTKDEQIKQIDISDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPIVLRKTVQGYYIVVGERRFRA
SKIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEEAESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPK
KIADMVKDGRLTSAHGRTLLAIKDEQQMLRLAKRVVKEKWSVRYLENHVNELKNVSSKSETDKVDITKPKFIKQQERQLR
EQYGAKVDISIKKSVGKISFEFESQDDFVRIIEQLNRKYGK

Nucleotide


Download         Length: 846 bp        

>NTDB_id=49137 CA347_RS01890 WP_001621659.1 417258..418103(+) (spo0J) [Staphylococcus aureus CA-347]
GTGAGTGAATTGTCAAAAAGTGAAGATCAACGTATTACTAAAACAAAAGATGAACAAATTAAGCAAATAGATATATCGGA
TATCAAACCGAATCCGTATCAGCCCCGAAAAACTTTCGATGAAAATCATTTAAATGATTTGGCAGATTCAATTAAGCAAT
ATGGTATTTTGCAACCAATTGTGCTTAGAAAAACAGTTCAAGGTTATTACATTGTAGTTGGTGAAAGAAGGTTTAGAGCT
TCGAAAATTGCTGGTCTAAAATACGTATCAGCGATTATCAAAGATTTAACAGATGAAGATATGATGGAACTGGCGGTCAT
CGAAAATTTACAACGAGAAGACTTAAATGCGATTGAAGAAGCTGAAAGTTATCAACGTTTGATGACAGATTTGAAAATTA
CACAACAAGAAGTAGCGAAGCGATTGAGTAAGTCGCGCCCGTATATAGCGAATATGTTGAGGTTATTACATTTACCGAAA
AAGATTGCTGACATGGTAAAAGATGGGCGACTGACAAGTGCACATGGACGAACGTTATTGGCAATTAAAGATGAACAACA
AATGCTTAGGTTAGCGAAACGGGTTGTTAAAGAAAAGTGGAGTGTTAGATATTTAGAAAACCATGTTAATGAATTAAAAA
ATGTTTCGTCAAAGTCGGAAACAGACAAAGTAGATATAACTAAGCCTAAATTTATAAAGCAACAAGAACGACAGTTGCGA
GAACAGTATGGCGCAAAAGTAGATATATCGATAAAAAAATCAGTCGGCAAAATCTCATTTGAGTTTGAATCGCAAGATGA
CTTTGTGAGAATCATTGAACAATTAAATCGTAAGTATGGTAAATAG

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(22-109)

HTH domain found in ParB protein (HTH_ParB)

(161-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

40.996

92.883

0.381

Multiple sequence alignment