Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   J5O00_RS01910 Genome accession   NZ_CP074415
Coordinates   384478..385335 (+) Length   285 a.a.
NCBI ID   WP_021823357.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 64     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 379478..390335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5O00_RS01895 - 380533..381558 (+) 1026 WP_029804662.1 ABC transporter permease subunit -
  J5O00_RS01900 - 381560..382603 (+) 1044 WP_015296095.1 ABC transporter permease subunit -
  J5O00_RS01905 - 382642..384468 (+) 1827 WP_005458972.1 extracellular solute-binding protein -
  J5O00_RS01910 amiE 384478..385335 (+) 858 WP_021823357.1 ABC transporter ATP-binding protein Regulator
  J5O00_RS01915 - 385372..386211 (+) 840 WP_021822504.1 ABC transporter ATP-binding protein -
  J5O00_RS01920 - 386341..386766 (+) 426 WP_005458957.1 phosphate-starvation-inducible PsiE family protein -
  J5O00_RS01925 - 386821..387687 (-) 867 WP_015296114.1 YicC/YloC family endoribonuclease -
  J5O00_RS01930 rph 387902..388618 (+) 717 WP_005459025.1 ribonuclease PH -
  J5O00_RS01935 pyrE 388723..389364 (+) 642 WP_023583818.1 orotate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31610.65 Da        Isoelectric Point: 4.4929

>NTDB_id=491359 J5O00_RS01910 WP_021823357.1 384478..385335(+) (amiE) [Vibrio parahaemolyticus strain 64]
MENDVILSVKDLEVEFITDDGPVKVLHGVNFDVRSGRTLGLVGESGSGKSVTSMSIMGLLPKPYGNIVNGEVNYRGTNLV
SLPAEEMYAMRGDRISIIFQDPMTALNPVHTIGRQLCEVLELHRPELGKKERESYAVEMLAKVKIPMPEKRLNEYPHNLS
GGMRQRVMIAMALACKPDILICDEPTTALDVTVQASILELMNELQEETGMAMIFITHDLGVVAEVCDDVAVMYGGRIVEK
AEIFELFDNPQHPYTERLMGLMPSLDNEPKQMIDIKPIDASMFAS

Nucleotide


Download         Length: 858 bp        

>NTDB_id=491359 J5O00_RS01910 WP_021823357.1 384478..385335(+) (amiE) [Vibrio parahaemolyticus strain 64]
ATGGAAAACGATGTAATTTTGAGTGTAAAAGACCTCGAAGTGGAATTCATCACGGATGATGGCCCGGTAAAAGTACTCCA
TGGCGTGAACTTTGATGTTCGTTCAGGACGAACGCTCGGTCTCGTTGGTGAGTCTGGCAGTGGTAAGAGCGTGACCTCAA
TGTCCATCATGGGACTGTTGCCAAAGCCTTACGGCAATATTGTCAATGGTGAAGTTAACTACCGAGGTACCAATCTGGTG
TCGCTACCAGCGGAAGAAATGTACGCCATGCGCGGCGACCGCATTTCGATCATTTTCCAAGACCCAATGACGGCATTGAA
TCCAGTGCATACCATTGGCCGCCAACTGTGCGAAGTGTTGGAATTACACCGTCCTGAGCTAGGTAAAAAAGAGCGCGAAT
CCTACGCGGTAGAAATGCTGGCTAAAGTGAAAATTCCAATGCCAGAAAAGCGCCTCAACGAATACCCGCACAACCTATCT
GGTGGTATGCGTCAGCGCGTGATGATCGCAATGGCACTCGCATGTAAACCAGATATTTTGATTTGTGATGAGCCAACGAC
GGCACTGGATGTAACGGTACAGGCGTCTATCCTTGAACTAATGAATGAACTTCAAGAAGAAACGGGCATGGCAATGATCT
TCATTACCCATGATTTAGGCGTAGTTGCTGAAGTGTGTGATGACGTTGCGGTAATGTATGGTGGTCGTATTGTCGAAAAA
GCGGAGATTTTTGAGCTGTTTGACAATCCGCAGCACCCTTACACGGAACGTTTGATGGGCTTAATGCCAAGTTTGGACAA
CGAACCTAAGCAGATGATTGATATCAAACCAATCGATGCCAGCATGTTTGCTAGCTAA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-273)

ABC transporter (ABC_tran)

(26-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

48.582

98.947

0.481
  amiE Streptococcus thermophilus LMD-9

48.582

98.947

0.481
  amiE Streptococcus salivarius strain HSISS4

48.582

98.947

0.481
  oppD Streptococcus mutans UA159

50.752

93.333

0.474
  amiF Streptococcus salivarius strain HSISS4

39.464

91.579

0.361